View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19246_low_1 (Length: 573)
Name: NF19246_low_1
Description: NF19246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19246_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 17 - 557
Target Start/End: Complemental strand, 18966264 - 18965726
Alignment:
| Q |
17 |
tatcaaggatttataacaacaccaaaaaatcatttctcgttgagttcaattgtattaacggtagaggctagaagcatatttgctaatatg---ctatctt |
113 |
Q |
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| T |
18966264 |
tatcaaggatttataacaaaat-aaaaaatcacttctcgttgagttcaattgtattaacggtagaggctagaagcatatttgctaatatatatccatctt |
18966166 |
T |
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| Q |
114 |
gcttccaacttttacatctattaggaatattattgagtggctttgataaactgtaaaagaaagaggttatgaacgaaaatgaaggcgtaagacccgaatg |
213 |
Q |
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| T |
18966165 |
gcttccaacttttacatgtattaggaatattattaagtggctttgataaactgtaaaagaaagaggttatgaacgaaaatgaaggcgtaatacccgaatg |
18966066 |
T |
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| Q |
214 |
tgttgattttttaaatgtaggaattaatgacatgtggaagagaatttcttatacatttcctcaaaagaaagaaagaaaactaattgcacaagttatcatg |
313 |
Q |
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| T |
18966065 |
tattgatttttt-aatgtaggaattaatgacatgtggaagagaattgcttatacatttcctcaaaagaaatacagaaaactaattgcacaagtt---atg |
18965970 |
T |
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| Q |
314 |
aacacctttcctccgcctcggcagcttccctatgtggtgatcctccgtaaaaccccgcctccgtccaatgtgttggaatcaccgcctccgtccaatgcgt |
413 |
Q |
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| T |
18965969 |
aacacatttcctccgcctcggcagcttccctatgtggtgatcctccgtaaaaccccgcctccatccaatgtgttggaatcaccgcctccgtccaatgtat |
18965870 |
T |
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| Q |
414 |
tggaagcgctacctcagccaaatccctcggtattggcggtaatacattccgaagaacttattatcgaaatactatcacatcttagtgtgaaatctctgat |
513 |
Q |
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| T |
18965869 |
ccgcatttctgtctcagccaaatccctcggtattggcggtaatccactccgaagaacttattatcgaaatactatcacatcttagtgtgaaatctctgat |
18965770 |
T |
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| Q |
514 |
gcaacttaagagtgtgagcaagacatggaaaactatcatctctg |
557 |
Q |
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| T |
18965769 |
gcaacttaagtgtgtgagcaagacatggaaaaccatcatctctg |
18965726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 266
Target Start/End: Original strand, 14075591 - 14075629
Alignment:
| Q |
228 |
atgtaggaattaatgacatgtggaagagaatttcttata |
266 |
Q |
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| T |
14075591 |
atgtaggaattaatgacatgtggaagtgaattgcttata |
14075629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 266
Target Start/End: Original strand, 14385619 - 14385657
Alignment:
| Q |
228 |
atgtaggaattaatgacatgtggaagagaatttcttata |
266 |
Q |
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| T |
14385619 |
atgtaggaattaatgacatgtggaagtgaattgcttata |
14385657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 515
Target Start/End: Original strand, 20770129 - 20770177
Alignment:
| Q |
467 |
gaacttattatcgaaatactatcacatcttagtgtgaaatctctgatgc |
515 |
Q |
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| T |
20770129 |
gaacttattaccgaaatactatcacggcttaacgtgaaatctctgatgc |
20770177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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