View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19246_low_3 (Length: 439)

Name: NF19246_low_3
Description: NF19246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19246_low_3
NF19246_low_3
[»] chr6 (3 HSPs)
chr6 (78-423)||(34353323-34353674)
chr6 (14-51)||(1682586-1682623)
chr6 (14-54)||(33629644-33629684)
[»] chr8 (1 HSPs)
chr8 (14-54)||(19385264-19385304)
[»] chr4 (2 HSPs)
chr4 (14-54)||(3130533-3130573)
chr4 (14-54)||(47540471-47540511)
[»] chr3 (3 HSPs)
chr3 (14-54)||(32004526-32004566)
chr3 (14-54)||(49732487-49732527)
chr3 (14-53)||(13448025-13448064)
[»] chr1 (5 HSPs)
chr1 (14-54)||(14366178-14366218)
chr1 (14-54)||(21527707-21527747)
chr1 (14-54)||(52336208-52336248)
chr1 (14-53)||(48266273-48266312)
chr1 (14-54)||(4644558-4644599)
[»] chr7 (1 HSPs)
chr7 (14-54)||(9546283-9546323)
[»] chr5 (1 HSPs)
chr5 (14-54)||(10487460-10487500)


Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 78 - 423
Target Start/End: Original strand, 34353323 - 34353674
Alignment:
Q  78 agttgatttttgtcattccatataggtgggtcaccaaatgacccattgtattgccaaacatgcaacccaaaatgaggaaataaatgtagg---gataaga 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||    
T  34353323 agttgatttttgtcattccatataggtgggtcaccaaatgacccattgtattgccaaacatgcaacccaaaatgaggaaataaatgtaggatcgataaga 34353422  T
Q  175 aattaccaatgatttggattttggaagtcccgtatttttgtgtgctctcctttgtaagtgacctgactcatttgggtctttaattcttcaaaaatatctt 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34353423 aattaccaatgatttggattttggaagtcccgtatttttgtgtgctctcctttgtaagtgacctgactcatttgggtctttaattcttcaaaaatatctt 34353522  T
Q  275 attttattaacac--aaaaaatactattttaaggaacgtttcaatta-annnnnnnngttaactctctggtttttatggaaatggtgccccaataattca 371  Q
    |||||||||||||  |||||||||||||||||||||||||||| |||          |||||||||||||||||||||||||||||||||||||||||||    
T  34353523 attttattaacacaaaaaaaatactattttaaggaacgtttcagttattttttttttgttaactctctggtttttatggaaatggtgccccaataattca 34353622  T
Q  372 aatttgtgatactcattaaacacttaagctaaattcacttgattgttgattt 423  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  34353623 aatttgtggaactcattaaacacttaagctaaattcacttgattgttgattt 34353674  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 1682586 - 1682623
Alignment:
Q  14 agagttacaacaaaacaaccaatccaacagagctacat 51  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1682586 agagttacaacaaaacaaccaatccaacagagctacat 1682623  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 33629644 - 33629684
Alignment:
Q  14 agagttacaacaaaacaaccaatccaacagagctacatcag 54  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  33629644 agagttacaacaaaacaaccaacccaacagagctacatcag 33629684  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 19385304 - 19385264
Alignment:
Q  14 agagttacaacaaaacaaccaatccaacagagctacatcag 54  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  19385304 agagttacaacaaaacaaccaacccaacagagctacatcag 19385264  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 3130573 - 3130533
Alignment:
Q  14 agagttacaacaaaacaaccaatccaacagagctacatcag 54  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  3130573 agagttacaacaaaacaaccaacccaacagagctacatcag 3130533  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 47540471 - 47540511
Alignment:
Q  14 agagttacaacaaaacaaccaatccaacagagctacatcag 54  Q
    |||||||||||||||||||||| ||||||||| ||||||||    
T  47540471 agagttacaacaaaacaaccaacccaacagagttacatcag 47540511  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 32004526 - 32004566
Alignment:
Q  14 agagttacaacaaaacaaccaatccaacagagctacatcag 54  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  32004526 agagttacaacaaaacaaccaacccaacagagctacatcag 32004566  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 49732527 - 49732487
Alignment:
Q  14 agagttacaacaaaacaaccaatccaacagagctacatcag 54  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  49732527 agagttacaacaaaacaaccaacccaacagagctacatcag 49732487  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 13448025 - 13448064
Alignment:
Q  14 agagttacaacaaaacaaccaatccaacagagctacatca 53  Q
    |||||||||| ||||||||||| |||||||||||||||||    
T  13448025 agagttacaataaaacaaccaacccaacagagctacatca 13448064  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 14366218 - 14366178
Alignment:
Q  14 agagttacaacaaaacaaccaatccaacagagctacatcag 54  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  14366218 agagttacaacaaaacaaccaacccaacagagctacatcag 14366178  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 21527707 - 21527747
Alignment:
Q  14 agagttacaacaaaacaaccaatccaacagagctacatcag 54  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  21527707 agagttacaacaaaacaaacaacccaacagagctacatcag 21527747  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 52336208 - 52336248
Alignment:
Q  14 agagttacaacaaaacaaccaatccaacagagctacatcag 54  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  52336208 agagttgcaacaaaacaaccaacccaacagagctacatcag 52336248  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 48266312 - 48266273
Alignment:
Q  14 agagttacaacaaaacaaccaatccaacagagctacatca 53  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  48266312 agagttacaacaaaacaaccaacacaacagagctacatca 48266273  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 4644558 - 4644599
Alignment:
Q  14 agagttacaacaaaa-caaccaatccaacagagctacatcag 54  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  4644558 agagttacaacaaaaacaaccaacccaacagagctacatcag 4644599  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 9546283 - 9546323
Alignment:
Q  14 agagttacaacaaaacaaccaatccaacagagctacatcag 54  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  9546283 agagttacaacaaaacaaacaacccaacagagctacatcag 9546323  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 10487500 - 10487460
Alignment:
Q  14 agagttacaacaaaacaaccaatccaacagagctacatcag 54  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  10487500 agagttacaacaaaacaaacaacccaacagagctacatcag 10487460  T

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