View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19246_low_4 (Length: 437)
Name: NF19246_low_4
Description: NF19246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19246_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 15 - 363
Target Start/End: Original strand, 34254865 - 34255213
Alignment:
| Q |
15 |
aatatcaaaatcaaccaaccaattttcatgtatgccaattgaatcaaatcaaattatattaataatctttttgtgcagctgaggactctctcatatttct |
114 |
Q |
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| T |
34254865 |
aatatcaaaatcaaccaaccaattttcatgtatgccaattgaatcaaatcaaattatattaataatctttttgtgcagctgaggactctctcatatttct |
34254964 |
T |
|
| Q |
115 |
cttgaagtggtttgagcgttttcctcagtataaagaaacagactttttcattagtggtgagagctatgcaggtaaatacaaatggtgtgataaataagga |
214 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
34254965 |
cttgaagtggtttgagcgttttcctcggtataaagaaacagactttttcattagtggtgagagctatgcaggtaaatacaaatggtgagatagataagga |
34255064 |
T |
|
| Q |
215 |
aactttatcatgtcatgtgtttgagttctttgattatggcttcccttgtttcaggacattatgttccccaacttagccaagttattgtcaagtacaactc |
314 |
Q |
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||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34255065 |
aactttatcatttcatgtgtttgagttctttgattctggctttccttgtttcaggacattatgttccccaacttagccaagttattgtcaagcacaactc |
34255164 |
T |
|
| Q |
315 |
agctacaaaccaaaattctataaatctcaaaggttacatggtatgaatt |
363 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34255165 |
agctacaaaacaaaattctataaatctcaaaggttacatggtatgaatt |
34255213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 28 - 364
Target Start/End: Original strand, 26627673 - 26628009
Alignment:
| Q |
28 |
accaaccaattttcatgtatgccaattgaatcaaatcaaattatattaataat-ctttttgtgcagctgaggactctctcatatttctcttgaagtggtt |
126 |
Q |
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|||||||| |||||||||||| |||||||||| || ||||||| |||| |||| | || |||||||||||||| |||||||||||| ||||||||||| |
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| T |
26627673 |
accaaccatttttcatgtatgtcaattgaatcgaagcaaattaaattattaattcgttatgtgcagctgaggataatctcatatttctattgaagtggtt |
26627772 |
T |
|
| Q |
127 |
tgagcgttttcctcagtataaagaaacagactttttcattagtggtgagagctatgcaggtaaatacaaatggtgtgataaataaggaaactttatcatg |
226 |
Q |
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|||||||||||| ||||||||| | |||||||||||||| |||||||||||||||||||||||| |||||||||| |||| ||||||| || |||||||| |
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| T |
26627773 |
tgagcgttttccccagtataaaaacacagactttttcatcagtggtgagagctatgcaggtaaacacaaatggtgagatagataaggacac-ttatcatg |
26627871 |
T |
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| Q |
227 |
tcatgtgtttgagttctttgattatggcttcccttgtttcaggacattatgttccccaacttagccaagttattgtcaagtacaactcagctacaaacca |
326 |
Q |
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||| ||||||| ||| | ||| | | || |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| || ||||| || |
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| T |
26627872 |
tcaaatgtttgatttcactaattctagttttccttgtttcaggacattatgttccgcaacttagccaagttattgccaagtacaacttagaaacaaaaca |
26627971 |
T |
|
| Q |
327 |
aaattctataaatctcaaaggttacatggtatgaattc |
364 |
Q |
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| T |
26627972 |
agattctataaatctcaaagggtacatggtatgcattc |
26628009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 81 - 364
Target Start/End: Original strand, 26642475 - 26642757
Alignment:
| Q |
81 |
ctttttgtgcagctgaggactctctcatatttctcttgaagtggtttgagcgttttcctcagtataaagaaacagactttttcattagtggtgagagcta |
180 |
Q |
| |
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|||| |||||||||||||| |||||||||||| || |||||||||||||||||||| ||||| ||| |||||||||||||||| |||||||||||||| |
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| T |
26642475 |
ctttatgtgcagctgaggataatctcatatttctattaaagtggtttgagcgttttccccagtacaaaaaaacagactttttcatcagtggtgagagcta |
26642574 |
T |
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| Q |
181 |
tgcaggtaaatacaaatggtgtgataaataaggaaactttatcatgtcatgtgtttgagttctttgattatggcttcccttgtttcaggacattatgttc |
280 |
Q |
| |
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||||||||| |||| ||||| |||| | |||| |||| ||||||||| ||||||||||||| | ||| ||| || ||||||||||||||||||||||| |
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| T |
26642575 |
tgcaggtaagcacaagtggtgggatagacaagggcactt-atcatgtcaagtgtttgagttctctaattttggttttccttgtttcaggacattatgttc |
26642673 |
T |
|
| Q |
281 |
cccaacttagccaagttattgtcaagtacaactcagctacaaaccaaaattctataaatctcaaaggttacatggtatgaattc |
364 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| |||||||||||||| |
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| T |
26642674 |
cacaacttagccaagttattgtcaagtacaactcagctacaaaacacgattctataaatttcaaaggtttcatggtatgaattc |
26642757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 43 - 364
Target Start/End: Original strand, 26635247 - 26635568
Alignment:
| Q |
43 |
tgtatgccaattgaatcaaatcaaattatattaataat-ctttttgtgcagctgaggactctctcatatttctcttgaagtggtttgagcgttttcctca |
141 |
Q |
| |
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|||||| | |||||||||||| |||||| |||||||| |||| |||||||||||||| |||||||||||| || |||||||||||||||||||| || |
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| T |
26635247 |
tgtatgacgattgaatcaaattaaattaatttaataattctttatgtgcagctgaggataatctcatatttcttttaaagtggtttgagcgttttcccca |
26635346 |
T |
|
| Q |
142 |
gtataaagaaacagactttttcattagtggtgagagctatgcaggtaaatacaaatggtgtgataaataaggaaactttatcatgtcatgtgtttgagtt |
241 |
Q |
| |
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||| ||| |||||||||||||||| |||||||||||||||||||||||| ||||||||| |||| || |||| | | ||| ||||| ||||||||||| |
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| T |
26635347 |
gtacaaaaaaacagactttttcatcagtggtgagagctatgcaggtaaacgcaaatggtgagatagatgaggaca-tatattatgtctagtgtttgagtt |
26635445 |
T |
|
| Q |
242 |
ctttgattatggcttcccttgtttcaggacattatgttccccaacttagccaagttattgtcaagtacaactcagctacaaaccaaaattctataaatct |
341 |
Q |
| |
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|| | | | ||| | |||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||| | |
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| T |
26635446 |
ctctaactttggtcttgcttgtttcaggacattatattcctcaacttagccaagttattgtcaagtacaactcggctacaaaacaagattctataaattt |
26635545 |
T |
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| Q |
342 |
caaaggttacatggtatgaattc |
364 |
Q |
| |
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|||||||| | |||||||||||| |
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| T |
26635546 |
caaaggtttcctggtatgaattc |
26635568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 194 - 363
Target Start/End: Complemental strand, 13640073 - 13639905
Alignment:
| Q |
194 |
aaatggtgtgataaataaggaaactttatcatgtcatgtgtttgagttctttgattatggcttcccttgtttcaggacattatgttccccaacttagcca |
293 |
Q |
| |
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|||||||| |||| ||||||| |||| ||||||||| |||||||||||||| ||| ||| || ||||||||||||||||||||||||||| |||||||| |
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| T |
13640073 |
aaatggtgagatagataaggacactt-atcatgtcaaatgtttgagttctttaattttggttttccttgtttcaggacattatgttccccagcttagcca |
13639975 |
T |
|
| Q |
294 |
agttattgtcaagtacaactcagctacaaaccaaaattctataaatctcaaaggttacatggtatgaatt |
363 |
Q |
| |
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||||||| ||||| |||||||||||||||| ||| ||||||||||||| |||||||| |||||||||||| |
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|
| T |
13639974 |
agttattatcaagcacaactcagctacaaaacaagattctataaatcttaaaggttatatggtatgaatt |
13639905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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