View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19246_low_5 (Length: 414)
Name: NF19246_low_5
Description: NF19246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19246_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 9750560 - 9750167
Alignment:
| Q |
1 |
aagttggtggatgatggaaaggtgaagcaaattacaggatctaaaaacagccaagttccatcccattatttcaaggggaactttgagagcctagaagctt |
100 |
Q |
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| T |
9750560 |
aagttggtggatgatggaaaggtgaagcaaattacaggatctaaaaacagccaatttccatcccattatttcaaggggaactttgagagcctagaagctt |
9750461 |
T |
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| Q |
101 |
tgtgagatttatttacaaagtatgctaacagtgttggttaagtgataaataacaggaagtcaactatttatgcaggaggaatctcaccaacaagactcga |
200 |
Q |
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| T |
9750460 |
tgtgagatttatttacaaagtatgctaatagtgttggttaagtgataaatagcatgaagtcaactatttatgcaggaggaatctcaccaacaagactcca |
9750361 |
T |
|
| Q |
201 |
aaatatcatcaacttactaggattctatattgactctttaccacttaactaattaggggagccaatttttaaaggaagaccaaaagcttgccatcttcaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
9750360 |
aaatatcatcaacttactaggattctatattgactctttaccacttaactatttgggggagccaatttttaaaggaataccaaaagcttgccatgttcaa |
9750261 |
T |
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| Q |
301 |
ccaatagtagagaaactatcagcttggaaggcatcattgctttcaattgcaggaagagtacaagtgccaaagtctgtggttactagaatgctag |
394 |
Q |
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| T |
9750260 |
ccaatagcagagtaactatcggcttggaaggcatcattgctttcaattgcaggaagagtacaagtgccaaagtctgtggttactagaatgctag |
9750167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 104 - 218
Target Start/End: Complemental strand, 3564340 - 3564226
Alignment:
| Q |
104 |
gagatttatttacaaagtatgctaacagtgttggttaagtgataaataacaggaagtcaactatttatgcaggaggaatctcaccaacaagactcgaaaa |
203 |
Q |
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| T |
3564340 |
gagatttgtttacaaagtatgctaatagtgctagtcaagtgataagctgcaggaaatcaacaatttattctggtggaatctcaccaactagactccaaaa |
3564241 |
T |
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| Q |
204 |
tatcatcaacttact |
218 |
Q |
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||||||||| |||| |
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| T |
3564240 |
catcatcaacctact |
3564226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 16920609 - 16920572
Alignment:
| Q |
322 |
gcttggaaggcatcattgctttcaattgcaggaagagt |
359 |
Q |
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| T |
16920609 |
gcttggaaagcatcattgctttctattgcaggaagagt |
16920572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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