View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19246_low_6 (Length: 407)
Name: NF19246_low_6
Description: NF19246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19246_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 48487302 - 48487687
Alignment:
| Q |
1 |
taaggcaaaccaattacaagtttttgagaagaaaatcctctttttctccactctttaatacctgaatcagtattttcccaaccagatgaaccatacaaag |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48487302 |
taaggcaaaccaattacaagtttgtgagaagaaaatcctctttttctccactctttaatacctgaatcagtattttcccaaccagatgaaccatacaaag |
48487401 |
T |
|
| Q |
101 |
ccgcgtggaaacccgtaaaattgtcctttttaggaagatagtaatcatatgcaacaaaatgaacccaatccaaattcttctgcattgattcaaaaggata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48487402 |
ccgcgtggaaacccgtaaaattgtcctttttaggaagatagtaatcatatgcaacaaaatgaacccaatccaaattcttctgcattgattcaaaaggata |
48487501 |
T |
|
| Q |
201 |
actaaaggaatctgaagctttaagataataacctgccatcaccaaaactaactctggttttttagtgtttcttgcttcagaagttatcgcgattcgcaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48487502 |
actaaaggaatctgaagctttaagataataacctgccatcaccaaaactaactctggttttttagtgtttcttgcttcagaagttatcgctattcgcaat |
48487601 |
T |
|
| Q |
301 |
tccttcaaaagggttgccaaatttgcaagttcattgccttgctttggcttaactccacgaaagtctatgccttgaaacccatagtt |
386 |
Q |
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| T |
48487602 |
tccttcaaaagggttgccaaatttgcaagttcattgccttgctttggcttaactccacgaaagtctatgccttgaaacccatagtt |
48487687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 48478833 - 48479209
Alignment:
| Q |
1 |
taaggcaaaccaattacaagtttttgagaagaaaatcctctttttctccactctttaatacctgaatcagtattttcccaaccagatgaaccatacaaag |
100 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
48478833 |
taaggcaaaccaattacaagtttgttagaagaaaatcctctttttctccactctttgatacctgaatcagtattttcccagccagatgaaccatataaag |
48478932 |
T |
|
| Q |
101 |
ccgcgtggaaacccgtaaaattgtcctttttaggaagatagtaatcatatgcaacaaaatgaacccaatccaaattcttctgcattgattcaaaaggata |
200 |
Q |
| |
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|| || |||| || | | ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48478933 |
gtgcatgaaaacgtgtgacactgtcccttttaggaagatagtaattatatgcaacaaaatgaacccaatccaaattcttctgcattgattcaaaaggata |
48479032 |
T |
|
| Q |
201 |
actaaaggaatctgaagctttaagataataacctgccatcaccaaaactaactctggttttttagtgtttcttgcttcagaagttatcgcgattcgcaat |
300 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| ||||||||| ||||| |||| | |||||||||||||||| ||||||||||| || |||||| | |
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| T |
48479033 |
actaagggaatctgaagctttaagataataacctgtcatcaccaacactaattctgatcttttagtgtttcttgcctcagaagttattgcaattcgccac |
48479132 |
T |
|
| Q |
301 |
tccttcaaaagggttgccaaatttgcaagttcattgccttgctttggcttaactccacgaaagtctatgccttgaaa |
377 |
Q |
| |
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|| |||||||||||||| ||||| |||| || ||||| || |||||| | |||| |||||||||||||||||| |
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|
| T |
48479133 |
tctttcaaaagggttgcgaaattaacaagatctttgccctgttttggccctgcaccacaaaagtctatgccttgaaa |
48479209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 48470471 - 48470847
Alignment:
| Q |
1 |
taaggcaaaccaattacaagtttttgagaagaaaatcctctttttctccactctttaatacctgaatcagtattttcccaaccagatgaaccatacaaag |
100 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| || |||| |
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| T |
48470471 |
taaggcaaaccaattacaagtttgttagaagaaaatcctctttttctccactctttaatgcctgaatcagtattttcccagtcagatgaaccgtataaag |
48470570 |
T |
|
| Q |
101 |
ccgcgtggaaacccgtaaaattgtcctttttaggaagatagtaatcatatgcaacaaaatgaacccaatccaaattcttctgcattgattcaaaaggata |
200 |
Q |
| |
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| || || |||| || | | ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48470571 |
ctgcatgaaaacgtgtgacactgtcccttttaggaagatagtaatcatatgcagcaaaatgaacccaatccaaattcttctgcattgattcaaaaggata |
48470670 |
T |
|
| Q |
201 |
actaaaggaatctgaagctttaagataataacctgccatcaccaaaactaactctggttttttagtgtttcttgcttcagaagttatcgcgattcgcaat |
300 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||| ||||| |||| | |||||||||| ||||| |||||||||||||| | |||| | |
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|
| T |
48470671 |
actaagggaatctgaagctttaagataataacctgtcatcaccaacactaattctgatcttttagtgttacttgcctcagaagttatcgcaactcgccac |
48470770 |
T |
|
| Q |
301 |
tccttcaaaagggttgccaaatttgcaagttcattgccttgctttggcttaactccacgaaagtctatgccttgaaa |
377 |
Q |
| |
|
|| |||||||||||||| ||||| |||| || ||||| || |||||| | |||| |||||||||||||||||| |
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|
| T |
48470771 |
tctttcaaaagggttgcgaaattgacaagatctttgccctgttttggcactgcaccacaaaagtctatgccttgaaa |
48470847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 48883450 - 48883307
Alignment:
| Q |
1 |
taaggcaaaccaattacaagtttttgagaagaaaatcctctttttctccactctttaatacctgaatcagtattttcccaaccagatgaaccatacaaag |
100 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
48883450 |
taaggcaaaccaattacaagtttgttagaagaaaatcctctttttctccactctttgatacctgaatcagtattttcccagccagatgaaccatataaag |
48883351 |
T |
|
| Q |
101 |
ccgcgtggaaacccgtaaaattgtcctttttaggaagatagtaa |
144 |
Q |
| |
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|| || |||| || | ||||||| ||||||||||||||||| |
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| T |
48883350 |
gtgcatgaaaacgtgtgacattgtcccttttaggaagatagtaa |
48883307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 207 - 316
Target Start/End: Complemental strand, 48883305 - 48883196
Alignment:
| Q |
207 |
ggaatctgaagctttaagataataacctgccatcaccaaaactaactctggttttttagtgtttcttgcttcagaagttatcgcgattcgcaattccttc |
306 |
Q |
| |
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||||||||||| ||||||||||||||||| ||||| ||| ||||| |||| | |||||||||| ||||| |||||||||||||| | |||| | || ||| |
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| T |
48883305 |
ggaatctgaaggtttaagataataacctgtcatcagcaacactaattctgatcttttagtgttacttgcctcagaagttatcgcaactcgccactctttc |
48883206 |
T |
|
| Q |
307 |
aaaagggttg |
316 |
Q |
| |
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|||||||||| |
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|
| T |
48883205 |
aaaagggttg |
48883196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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