View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19246_low_7 (Length: 367)
Name: NF19246_low_7
Description: NF19246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19246_low_7 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 32835117 - 32834751
Alignment:
| Q |
1 |
cgaattagatacatatacacgtgaacaaatttaaataaaattttctagtatattttggtatcaaaattaattctcagaacgtcacataatgaaattgaag |
100 |
Q |
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| T |
32835117 |
cgaattagatacatatacacgtgaacaaatttaaataaaattttctagtatattttggtatcaaaactaattctcagaacgtcacataatgaaattgaag |
32835018 |
T |
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| Q |
101 |
attaattttttcttgagccatgaaacacacagaattaaggacatatactaccagtatccatcaacaaaagaaatggaaaactttctacataattcaattg |
200 |
Q |
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| T |
32835017 |
attaattttttcttaagccatgaaacacacagaattaaggacatatactaccagtatccatcaacaaaagaattggaaaactttctacataattcaattg |
32834918 |
T |
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| Q |
201 |
aaataaattctagtgatattccaaaaactcaatacatataaatcttgaaagttgaaaccccggtcatagtaaaaatccaaggcatgtataaaaatgaatt |
300 |
Q |
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| T |
32834917 |
aaataaattctagtgatattccaaaaactcaatacatataaatcttgaaaattgaaaccccggtcatagtaaaaatccaaggcatgtataaaaatgaatt |
32834818 |
T |
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| Q |
301 |
aaggaacatatatagattccatgcatatgataagatactaactacacagacaaatacattcgatacc |
367 |
Q |
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| T |
32834817 |
aaggaacatacatagattccatgcatatgataagatactaactacacagacaaatacattcgatacc |
32834751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 132 - 367
Target Start/End: Complemental strand, 32841365 - 32841130
Alignment:
| Q |
132 |
gaattaaggacatatactaccagtatccatcaacaaaagaaatggaaaactttctacataattcaattgaaataaattctagtgatattccaaaaactca |
231 |
Q |
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| T |
32841365 |
gaattaaggacatatactaccagtatccatcaacaaatgaaatggaaaactttctacataattcaattgaaataaattcttgtgatattccaaaaactca |
32841266 |
T |
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| Q |
232 |
atacatataaatcttgaaagttgaaaccccggtcatagtaaaaatccaaggcatgtataaaaatgaattaaggaacatatatagattccatgcatatgat |
331 |
Q |
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| T |
32841265 |
atacatataaatcttgaaagttgaaaccctggtcatagtaaaaatccaaggcatgtataaaaatgaattgaggagcatatatagattgcatgcatacaat |
32841166 |
T |
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| Q |
332 |
aagatactaactacacagacaaatacattcgatacc |
367 |
Q |
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| T |
32841165 |
aagatactaactacgcagacaaatacattcaatacc |
32841130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 32841465 - 32841372
Alignment:
| Q |
1 |
cgaattagatacatatacacgtgaacaaatttaaataaaattttctagtatattttggtatcaaaattaattctcagaacgtcacataatgaaa |
94 |
Q |
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| T |
32841465 |
cgaattagatacacatacacatgaacaaatttaaataaaattttctagtatattttggtatcgaaattaattatcagaacatcacatattgaaa |
32841372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 263 - 339
Target Start/End: Original strand, 31661713 - 31661789
Alignment:
| Q |
263 |
gtcatagtaaaaatccaaggcatgtataaaaatgaattaaggaacatatatagattccatgcatatgataagatact |
339 |
Q |
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| T |
31661713 |
gtcatagtgaaaatccaaggcatgtataaaaatgaattgaggaacatatatagattgcatgcacatgataagatact |
31661789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 263 - 339
Target Start/End: Original strand, 31683179 - 31683255
Alignment:
| Q |
263 |
gtcatagtaaaaatccaaggcatgtataaaaatgaattaaggaacatatatagattccatgcatatgataagatact |
339 |
Q |
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| T |
31683179 |
gtcatagtgaaaatccaaggcatgtataaaaatgaattgaggaacatgtatagattgcatgcacatgataagatact |
31683255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 236
Target Start/End: Original strand, 31661627 - 31661710
Alignment:
| Q |
153 |
agtatccatcaacaaaagaaatggaaaactttctacataattcaattgaaataaattctagtgatattccaaaaactcaataca |
236 |
Q |
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| T |
31661627 |
agtatccatcaacaaataaaatggacaactttctaaacccttcaattgaaataaattcttgtgatatttcaaaaactcaataca |
31661710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 236
Target Start/End: Original strand, 31683093 - 31683176
Alignment:
| Q |
153 |
agtatccatcaacaaaagaaatggaaaactttctacataattcaattgaaataaattctagtgatattccaaaaactcaataca |
236 |
Q |
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| T |
31683093 |
agtatccatcaacaaataaaatggacaactttctaaacccttcaattgaaataaattcttgtgatatttcaaaaactcaataca |
31683176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 27 - 295
Target Start/End: Complemental strand, 7479615 - 7479345
Alignment:
| Q |
27 |
aaatttaaataaaattttctagtatattttggtatcaaaattaattctcagaacgtcacataatgaaattgaagattaa-ttttttcttgagccatgaaa |
125 |
Q |
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||||| ||||||||||| ||| || ||||||||||| ||||||||||||||||| ||||||||||| ||| |||||||| ||||||||| || ||||| |
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| T |
7479615 |
aaattgaaataaaatttgctactacattttggtatcgaaattaattctcagaacatcacataatgagatttaagattaacttttttcttaagtaatgaag |
7479516 |
T |
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| Q |
126 |
cacacagaattaaggacata-tactaccagtatcca--tcaacaaaagaaatggaaaactttctacataattcaattgaaataaattctagtgatattcc |
222 |
Q |
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| T |
7479515 |
catagtgaattaaggacataatactactag-atccacatcaacaaattatatgaaaaactttctacataattcaattgaaataaattcttgtgaaattcc |
7479417 |
T |
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| Q |
223 |
aaaaactcaatacatataaatcttgaaagttgaaaccccggtcatagtaaaaatccaaggcatgtataaaaat |
295 |
Q |
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| T |
7479416 |
aaaaactcaatacatatatatcttgaaagttgaaa-ctctgtcatagtaaaaatccaaggcaaatataaaaat |
7479345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 7479688 - 7479643
Alignment:
| Q |
68 |
taattctcagaacgtcacataatgaaattgaagattaattttttct |
113 |
Q |
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| T |
7479688 |
taattctcagaacgtcacataatgaaattgaaaattaattttttct |
7479643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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