View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19247_high_1 (Length: 705)

Name: NF19247_high_1
Description: NF19247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19247_high_1
NF19247_high_1
[»] chr1 (1 HSPs)
chr1 (18-668)||(46843001-46843651)


Alignment Details
Target: chr1 (Bit Score: 610; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 18 - 668
Target Start/End: Complemental strand, 46843651 - 46843001
Alignment:
Q  18 aatctgaatcctcaactgagatccaaacagaacagttttgttctctggttttgaattcacttcactgnnnnnnncatctacaagaacatcaacaagacca 117  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  46843651 aatctgaatcttcaactgagatccaaacagaacagttttgttctctggttttgaattcacttcactgtttttttcatctacaagaacatcaacaagacca 46843552  T
Q  118 agaccaacaacttttgactccaatttatcccaacaacgtttgtgttcaccacaaacatgttgtgttctagggctatttgtttcagaccaaaaaggattct 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  46843551 agaccaacaacttttgactccaatttatcccaacaacgtttgtgttcaccacaaacatgttgtgttatagggctatttgtttcagaccaaaaaggattct 46843452  T
Q  218 tgaaacaagaaaaaggcttggtatcaagtattgaagtaggactcatcatggtttcagtttcatgaaaaccttttgatgtgaacaactttggagaattgaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46843451 tgaaacaagaaaaaggcttggtatcaagtattgaagtaggactcatcatggtttcagtttcatgaaaaccttttgatgtgaacaactttggagaattgaa 46843352  T
Q  318 gaaggatgaagtgattttctttgaactagaatcttccattatagtagtagcttagtcacaaactgtgaaacaaacacaacacataaaacaagaatatagc 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  46843351 gaaggatgaagtgattttctttgaactagaatcttccattatagtagtagcttagtcacaaactgtgaaacaaaaacaacacataaaacaagaatatagc 46843252  T
Q  418 aaaaatttagaaacatgcattctactgaaagctagaaaacatgaactgaaaataagtttccatgaatagaaacagaaacctatctatttctctgatctaa 517  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46843251 agaaatttagaaacatgcattctactgaaagctagaaaacatgaactgaaaataagtttccatgaatagaaacagaaacctatctatttctctgatctaa 46843152  T
Q  518 aacctctgtaatattctttactaaaccactaagaaaattgaaaaataaaatagtagtgttacttttcccccggcttttttgcactgtttctgagaataga 617  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46843151 aacctctgtaatattctttactaaaccactacgaaaattgaaaaataaaatagtagtgttacttttcccccggcttttttgcactgtttctgagaataga 46843052  T
Q  618 atcaagatggtgatgaaaaacgacatggaaagagagtctcagtagtcatca 668  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46843051 atcaagatggtgatgaaaaacgacatggaaagagagtctcagtagtcatca 46843001  T

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