View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19247_high_10 (Length: 321)
Name: NF19247_high_10
Description: NF19247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19247_high_10 |
 | |
|
| [»] scaffold0194 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0194 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 14 - 307
Target Start/End: Complemental strand, 26090 - 25797
Alignment:
| Q |
14 |
ttatcctccaagcttgttaatttgaacctctcgtcattttctcctaacccatcatcaccacttaacatcaagttttggtcttctatcttattgtttaaga |
113 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26090 |
ttatcctccacgcttgttaatttgaacctctcgtcattttctcctaacccatcatcaccacttaacatcaagttttggtcttctatcttattgtttaaga |
25991 |
T |
|
| Q |
114 |
caggaaacttgagaaaataaaccgggtcttcgatacctgattcttcgcggtttaaggctaatttaggtccaaaatctgcaaactgcatcacatctgcaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25990 |
caggaaacttgagaaaataaaccgggtcttcgatacctgattcttcgcggtttaaggctaatttaggtccaaaatctgcaaactgcatcacatctgcaaa |
25891 |
T |
|
| Q |
214 |
actcattttatcaaaagaatttgcaccataaaatcctcctgaagtttgtgtctgaggcatgtaattatccaccattccgttgttgttttcaccc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25890 |
actcattttatcaaaagaatttgcaccataaaatcctcctgaagtttgtgtctgaggcatgtaattatccaccattccgttgttgttttcaccc |
25797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University