View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19247_high_15 (Length: 251)
Name: NF19247_high_15
Description: NF19247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19247_high_15 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 1281678 - 1281455
Alignment:
| Q |
13 |
gagatctgttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccattt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1281678 |
gagatctgttgtttatgtgaatttcggaagcattacagttatgactccagagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccattt |
1281579 |
T |
|
| Q |
113 |
ttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1281578 |
ttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggt |
1281479 |
T |
|
| Q |
213 |
gtccacaagagaaagtgttgaacc |
236 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
1281478 |
gtccacaagagaaagtgttgaacc |
1281455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 30)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 6 - 236
Target Start/End: Complemental strand, 4617593 - 4617363
Alignment:
| Q |
6 |
aggagcagagatctgttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaa |
105 |
Q |
| |
|
|||||| | |||| |||||||||||||||||||| ||||||||||||||||| || |||||| | | |||||||||||||||| |||| ||| ||||||| |
|
|
| T |
4617593 |
aggagccgggatcagttgtttatgtgaatttcggcagcattacagttatgacacccgagcaattactggaatttgcttggggtttggccaattgcaagaa |
4617494 |
T |
|
| Q |
106 |
accatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagca |
205 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||| | ||||||||| |||||||||||||||||||| |
|
|
| T |
4617493 |
atcatttttgtggatcataaggcctgatcttgtcattggtggctcagtgattttctcatctgagtttacaaatgaaattgcagatagaggcctaatagca |
4617394 |
T |
|
| Q |
206 |
agttggtgtccacaagagaaagtgttgaacc |
236 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |
|
|
| T |
4617393 |
agttggtgtccacaagacaaagtgttgaacc |
4617363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 6 - 236
Target Start/End: Complemental strand, 4602360 - 4602130
Alignment:
| Q |
6 |
aggagcagagatctgttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaa |
105 |
Q |
| |
|
|||||| | |||| ||||||||||||||||| || ||||||||||||||||| || | ||| | ||||| ||||||||| |||| ||| || | || |
|
|
| T |
4602360 |
aggagccgggatccgttgtttatgtgaattttggcagcattacagttatgacaccccatcaattattagaattcgcttggggtttggccaattgccataa |
4602261 |
T |
|
| Q |
106 |
accatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagca |
205 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| |
|
|
| T |
4602260 |
accatttttgtggatcattaggcctgatcttgtcattggtggctcagtgattttgtcatctgagtttacaaatgaaatttcagatagaggcctaatagca |
4602161 |
T |
|
| Q |
206 |
agttggtgtccacaagagaaagtgttgaacc |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
4602160 |
agttggtgtccacaagagaaagtgttgaacc |
4602130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 6 - 236
Target Start/End: Complemental strand, 4564282 - 4564052
Alignment:
| Q |
6 |
aggagcagagatctgttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaa |
105 |
Q |
| |
|
|||||| | |||| ||||||||||||||||| |||||||||||||||||||| || | ||||| ||||||||||||||| |||| ||| |||| || |
|
|
| T |
4564282 |
aggagccgggatccgttgtttatgtgaattttggaagcattacagttatgacaccaaaacaactgttggaatttgcttgggggttggccaattgcaataa |
4564183 |
T |
|
| Q |
106 |
accatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagca |
205 |
Q |
| |
|
||| ||||||||||||| ||||||||| ||||||||||| |||||||| ||||||||||||| |||| |||||||||||||||||||||| |||| ||| |
|
|
| T |
4564182 |
accctttttgtggatcattaggcctgaccttgtcattggtggctcagtcgttttgtcatctgagtttgtgaatgaaatttcagatagaggcttaattgca |
4564083 |
T |
|
| Q |
206 |
agttggtgtccacaagagaaagtgttgaacc |
236 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| |
|
|
| T |
4564082 |
agttggtgtccacaggagaaagtattgaacc |
4564052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 4506417 - 4506203
Alignment:
| Q |
17 |
tctgttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgt |
116 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| ||||| |||||||| || || || |||||||||||| |||| |||||||||||||| ||||||| |
|
|
| T |
4506417 |
tctgttgtttatgtgaattttggaagcatcacaattatgtctccggagaaatttttagagtttgcttggggtttggccaatagcaagaaaccctttttgt |
4506318 |
T |
|
| Q |
117 |
ggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtcc |
216 |
Q |
| |
|
|||||| ||||||||||||||| ||||| ||||||||| ||||||| || || ||||| |||||||||||||||||| |||| |||||||| |||||| | |
|
|
| T |
4506317 |
ggatcattaggcctgatcttgtaattggtggctcagtggttttgtcttcagagtttgcaaatgaaatttcagatagaagccttatagcaagctggtgttc |
4506218 |
T |
|
| Q |
217 |
acaagagaaagtgtt |
231 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4506217 |
acaagagaaagtgtt |
4506203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 4461685 - 4461472
Alignment:
| Q |
15 |
gatctgttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccattttt |
114 |
Q |
| |
|
|||||||||| ||||| ||||| || ||||| |||||||||||||| || ||||| || |||||||||||| ||||| ||||||||||||| ||||| |
|
|
| T |
4461685 |
gatctgttgtctatgtaaattttggcagcatcacagttatgactcctgatcaactgttagagtttgcttggggtttggctgatagcaagaaacccttttt |
4461586 |
T |
|
| Q |
115 |
gtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgt |
214 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| | |||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4461585 |
atggatcattaggcctgatcttgtcattggcggctcgtttattttgtcatctgagtttgtgaatgaaatttcagatagaggcctaatagcaagctggtgt |
4461486 |
T |
|
| Q |
215 |
ccacaagagaaagt |
228 |
Q |
| |
|
|| |||||| |||| |
|
|
| T |
4461485 |
ccgcaagagcaagt |
4461472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 4514691 - 4514912
Alignment:
| Q |
15 |
gatctgttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccattttt |
114 |
Q |
| |
|
|||||||||||||||| ||||| || ||||| || ||||| |||||||| || | || |||||||||||| |||| |||||||||||| | ||||| |
|
|
| T |
4514691 |
gatctgttgtttatgttaattttggtagcatcacgattatgtctccggagaaattgttagagtttgcttggggtttggccaatagcaagaaaaccttttt |
4514790 |
T |
|
| Q |
115 |
gtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgt |
214 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||| ||||||| ||||| |||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4514791 |
atggatcattaggcctgatcttgtcattggtggctcagtggttttgtcgtctgagtttgtgaatgaaattgcagatagaggcctaatagcaagttggtgt |
4514890 |
T |
|
| Q |
215 |
ccacaagagaaagtgttgaacc |
236 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
4514891 |
ccacaagagaaagttttgaacc |
4514912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 3172302 - 3172082
Alignment:
| Q |
16 |
atctgttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttg |
115 |
Q |
| |
|
||||||||||||||| ||||| || ||||| | ||||||| ||| ||| || | || |||||||||||| | || || ||||||||||| |||||| |
|
|
| T |
3172302 |
atctgttgtttatgtaaattttggcagcatcatagttatgtctcaagagaaattattagagtttgcttggggtttagccaacagcaagaaaccctttttg |
3172203 |
T |
|
| Q |
116 |
tggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtc |
215 |
Q |
| |
|
||||| | ||||||||||||||||||||| ||||| || |||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3172202 |
tggattattaggcctgatcttgtcattggtggctcggttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaatagcaagttggtgtc |
3172103 |
T |
|
| Q |
216 |
cacaagagaaagtgttgaacc |
236 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
3172102 |
cgcaagagaaagtgttgaacc |
3172082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 4622698 - 4622491
Alignment:
| Q |
21 |
ttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgtggat |
120 |
Q |
| |
|
||||||| |||||||| || ||||||||||| ||||||| || ||||| || |||||||||||| ||||| ||||||||||||| ||||||||||| |
|
|
| T |
4622698 |
ttgtttacgtgaattttggcagcattacagtgatgactcgagatcaactattagagtttgcttggggtttggctgatagcaagaaaccctttttgtggat |
4622599 |
T |
|
| Q |
121 |
cactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtccacaa |
220 |
Q |
| |
|
|| ||||||||| |||||||| |||||||| | |||||||||||||| |||| |||||||||||||| |||||||||||| ||| |||||||||||||| |
|
|
| T |
4622598 |
cattaggcctgaccttgtcatgggcggctcgtttattttgtcatctgagtttgagaatgaaatttcaggtagaggcctaatcgcaggttggtgtccacaa |
4622499 |
T |
|
| Q |
221 |
gagaaagt |
228 |
Q |
| |
|
||| |||| |
|
|
| T |
4622498 |
gaggaagt |
4622491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 4626511 - 4626300
Alignment:
| Q |
17 |
tctgttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgt |
116 |
Q |
| |
|
||||||||||||||||| || || ||| ||| |||||||||||| || |||| || |||||||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
4626511 |
tctgttgtttatgtgaactttggcagcgttatagttatgactccacagaaactgttagagtttgcttggggtttggctgatagcaagaaaccctttttgt |
4626412 |
T |
|
| Q |
117 |
ggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtcc |
216 |
Q |
| |
|
|||||| ||||||||||||||| ||||| |||||| | |||| |||||| || |||| ||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
4626411 |
ggatcattaggcctgatcttgtgattggtggctcatttatttcgtcatccgagtttgagaatgaaatttcagatagaggcctaatcgcaagctggtgtcc |
4626312 |
T |
|
| Q |
217 |
acaagagaaagt |
228 |
Q |
| |
|
||||||||||| |
|
|
| T |
4626311 |
gcaagagaaagt |
4626300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 4574871 - 4574649
Alignment:
| Q |
14 |
agatctgttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttt |
113 |
Q |
| |
|
||||||||||||||||| ||||| || ||||| || |||||| ||| ||| | || || |||||||||||| |||| || ||||| ||||| |||| |
|
|
| T |
4574871 |
agatctgttgtttatgtaaattttggcagcatcactgttatgtctcgagagaagctcgtagagtttgcttggggtttggccaacagcaaaaaaccctttt |
4574772 |
T |
|
| Q |
114 |
tgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtg |
213 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||| ||| |||| |||||||| ||| ||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4574771 |
tgtggatcattaggcctgatcttgtcattggtggctcggtggttttctcatctgattttttgaaagaaatttcagatagaggactaatagcaagttggtg |
4574672 |
T |
|
| Q |
214 |
tccacaagagaaagtgttgaacc |
236 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
4574671 |
tccacaagagaaagtattgaacc |
4574649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 4613293 - 4613501
Alignment:
| Q |
20 |
gttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgtgga |
119 |
Q |
| |
|
||||||||||||||||| || ||||| || ||||||||| | || |||| || |||||||||||| |||| ||||||||| |||| |||||||||| |
|
|
| T |
4613293 |
gttgtttatgtgaattttgggagcatgaccgttatgactgcagaaaaactattagagtttgcttggggtttggcgaatagcaagcaaccctttttgtgga |
4613392 |
T |
|
| Q |
120 |
tcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtccaca |
219 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||||||||| || |||| ||||||||||||||||||||||||||| || || |||||||| || |
|
|
| T |
4613393 |
tcattaggcctgatcttgtcattggcggctcagttgttttgtcatcagagtttgtgaatgaaatttcagatagaggcctaatcgcgagctggtgtcctca |
4613492 |
T |
|
| Q |
220 |
agagaaagt |
228 |
Q |
| |
|
|||| |||| |
|
|
| T |
4613493 |
agagcaagt |
4613501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 4516881 - 4516662
Alignment:
| Q |
17 |
tctgttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgt |
116 |
Q |
| |
|
||||| |||||||||||||| |||||||| || || |||||||| || ||||| || || ||||||||| |||| || ||||||||||| ||||||| |
|
|
| T |
4516881 |
tctgtagtttatgtgaattttggaagcatcacggtcatgactccagatcaactgttagagttcgcttggggtttggccaacagcaagaaaccttttttgt |
4516782 |
T |
|
| Q |
117 |
ggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtcc |
216 |
Q |
| |
|
|||| | ||||||||| ||||||||||| ||||| || ||||||||||| || |||| |||||||| ||| ||||||||| |||||||||| |||||||| |
|
|
| T |
4516781 |
ggattattaggcctgaccttgtcattggtggctcggttattttgtcatccgattttgtgaatgaaacttcggatagaggcgtaatagcaagctggtgtcc |
4516682 |
T |
|
| Q |
217 |
acaagagaaagtgttgaacc |
236 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
4516681 |
gcaagagaaagtgttgaacc |
4516662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 77 - 236
Target Start/End: Complemental strand, 4561005 - 4560847
Alignment:
| Q |
77 |
tttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcga |
176 |
Q |
| |
|
|||||||||||| |||| || ||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| ||| |||| |||||||| ||| || |
|
|
| T |
4561005 |
tttgcttggggtttggccaacagcaagaaaccatttttatggatcattaggcctgatcttgtcattggtggctcggtggttttctcatctga-tttttga |
4560907 |
T |
|
| Q |
177 |
atgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaacc |
236 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4560906 |
aagaaatttcagatagaggactaatagcaagttggtgtccacaagagaaagtattgaacc |
4560847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 4266735 - 4266957
Alignment:
| Q |
14 |
agatctgttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttt |
113 |
Q |
| |
|
||||||||||||||||| ||||| || ||||| ||||||||| | | ||| | || || |||||||||||| |||| || |||||||| || |||| |
|
|
| T |
4266735 |
agatctgttgtttatgtaaattttggtagcatcacagttatgtcacgagagaagctcttagagtttgcttggggtttggccaacagcaagaacccttttt |
4266834 |
T |
|
| Q |
114 |
tgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtg |
213 |
Q |
| |
|
||||||| | ||||||||||||||||||||| |||||||| ||||||||||||| ||| || ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4266835 |
tgtggataattaggcctgatcttgtcattgggggctcagttgttttgtcatctgatttttttaaagaaatttcagatagaggactaatagcaagttggtg |
4266934 |
T |
|
| Q |
214 |
tccacaagagaaagtgttgaacc |
236 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
4266935 |
tccacaagataaagtgttgaacc |
4266957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 4299382 - 4299598
Alignment:
| Q |
6 |
aggagcagagatctgttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaa |
105 |
Q |
| |
|
|||||| | |||| ||||||||||||||||| || ||| |||||||||||||||| |||||||| || ||||||||||| |||| ||| ||| ||| |
|
|
| T |
4299382 |
aggagccgggatcggttgtttatgtgaattttggcagcgttacagttatgactccagagcaactgttagagattgcttggggtttggccaattgcaggaa |
4299481 |
T |
|
| Q |
106 |
accatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagca |
205 |
Q |
| |
|
||||||||||||||||| |||||| || |||||||||||||||| | |||||||||||||| |||| ||||||||||||| |||||||||||| ||| |
|
|
| T |
4299482 |
accatttttgtggatcattaggccagaccttgtcattggcggcttgtttattttgtcatctgagtttgagaatgaaatttcaaatagaggcctaaccgca |
4299581 |
T |
|
| Q |
206 |
agttggtgtccacaaga |
222 |
Q |
| |
|
|| | |||||||||||| |
|
|
| T |
4299582 |
agctagtgtccacaaga |
4299598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 4458155 - 4457935
Alignment:
| Q |
17 |
tctgttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaa-ccatttttg |
115 |
Q |
| |
|
|||||| ||||||| ||||| |||||||| ||||||||| ||| ||| | || ||||||||||||| | |||| || ||||||||| || |||||| |
|
|
| T |
4458155 |
tctgttatttatgtaaattttggaagcatcacagttatgtctcaagagaagctcttagaatttgcttgggttttggccaacagcaagaaaaccttttttg |
4458056 |
T |
|
| Q |
116 |
tggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtc |
215 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| || |||||||||| || |||| |||||||| ||| ||||||||| |||||||||||||||||| |
|
|
| T |
4458055 |
tggataactaggcctgatcttgtcattggtggctcggttgttttgtcatcggattttgtgaatgaaacttctgatagaggcttaatagcaagttggtgtc |
4457956 |
T |
|
| Q |
216 |
cacaagagaaagtgttgaacc |
236 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
4457955 |
cacaagataaagtgttgaacc |
4457935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 4503967 - 4504188
Alignment:
| Q |
15 |
gatctgttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccattttt |
114 |
Q |
| |
|
|||||||||||||||| ||||| || ||||||||||||||| || || || | || |||||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
4503967 |
gatctgttgtttatgtaaattttggcagcattacagttatgtcttaagataaattgttagagtttgcttggggtttggccaatagcaagaaacctttttt |
4504066 |
T |
|
| Q |
115 |
gtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgt |
214 |
Q |
| |
|
|||||| | ||||||||||||||| ||||| ||||||| | | ||||||||||| |||| |||||||| ||| ||||||| || |||||||||||||| |
|
|
| T |
4504067 |
gtggattattaggcctgatcttgttattggtggctcagaggtgttgtcatctgattttgtgaatgaaacttctaatagaggacttgtagcaagttggtgt |
4504166 |
T |
|
| Q |
215 |
ccacaagagaaagtgttgaacc |
236 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
4504167 |
ccacaagataaagtgttgaacc |
4504188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 4259726 - 4259937
Alignment:
| Q |
17 |
tctgttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgt |
116 |
Q |
| |
|
||||||||||| |||||||| || |||||||||||||||||||| || ||| || || ||||||||||| |||| |||||||||||||| ||||||| |
|
|
| T |
4259726 |
tctgttgtttacgtgaattttggcagcattacagttatgactccagatcaatttttagagtttgcttggggattggccaatagcaagaaaccctttttgt |
4259825 |
T |
|
| Q |
117 |
ggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtcc |
216 |
Q |
| |
|
|||||| ||||||||| || | ||||| ||||| | |||||||||||||| |||| || ||||||||| |||||||||||||| || || |||||||| |
|
|
| T |
4259826 |
ggatcattaggcctgacctcattattggtggctcctttattttgtcatctgagtttgagagtgaaatttcggatagaggcctaatcgcgagctggtgtcc |
4259925 |
T |
|
| Q |
217 |
acaagagaaagt |
228 |
Q |
| |
|
|||||| |||| |
|
|
| T |
4259926 |
gcaagagcaagt |
4259937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 4489925 - 4490144
Alignment:
| Q |
15 |
gatctgttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccattttt |
114 |
Q |
| |
|
|||||||||||||||| ||||| || ||||| || |||||| ||| ||| | || || ||||| |||||| |||| || ||||||||||| ||||| |
|
|
| T |
4489925 |
gatctgttgtttatgtaaattttggcagcatcactgttatgtctcgagagaagctattagagtttgcatggggtttggccaacagcaagaaacccttttt |
4490024 |
T |
|
| Q |
115 |
gtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgt |
214 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| |||||| | | ||||||||||| ||| ||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4490025 |
gtggatcattaggcctgatcttgttattggtggctcacaggtgttgtcatctgattttttgaaagaaatttcagatagaggactaatagcaagttggtgt |
4490124 |
T |
|
| Q |
215 |
ccacaagagaaagtgttgaa |
234 |
Q |
| |
|
||||||||||| || ||||| |
|
|
| T |
4490125 |
ccacaagagaaggtattgaa |
4490144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 4481255 - 4481034
Alignment:
| Q |
15 |
gatctgttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccattttt |
114 |
Q |
| |
|
|||||||||||||||| ||||| || ||||| ||| ||||| ||| ||| |||| || |||||||||||| | || |||||||| ||| ||||| |
|
|
| T |
4481255 |
gatctgttgtttatgtaaattttggcagcatcacaattatgtctcaagagaaactcttagagtttgcttggggttttgccaatagcaaaaaaaacttttt |
4481156 |
T |
|
| Q |
115 |
gtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgt |
214 |
Q |
| |
|
|||||| | |||| || ||||||||||||| ||||||||| | ||||||||||| | | ||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4481155 |
gtggattattaggtctaatcttgtcattggtggctcagtggtgttgtcatctgagtatttgaaagaaatttcaaatagaggcctaatagcaagttggtgt |
4481056 |
T |
|
| Q |
215 |
ccacaagagaaagtgttgaacc |
236 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
4481055 |
ccacaagagaaagttttgaacc |
4481034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 4579992 - 4579781
Alignment:
| Q |
17 |
tctgttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgt |
116 |
Q |
| |
|
|||||||||||||||||||| || ||| | |||||||||||| | || |||| || ||||| |||||| | || ||||||||| |||| ||||||| |
|
|
| T |
4579992 |
tctgttgtttatgtgaattttgggagcttgacagttatgactgcagaaaaactgttagagtttgcatggggtttagcaaatagcaagcaaccctttttgt |
4579893 |
T |
|
| Q |
117 |
ggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtcc |
216 |
Q |
| |
|
|||||| |||||| ||||||||||| |||||||||| |||||||||| || |||| |||||||||||||||||||||||||||| | || |||||||| |
|
|
| T |
4579892 |
ggatcattaggcccgatcttgtcatcggcggctcagctgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaataacgagctggtgtcc |
4579793 |
T |
|
| Q |
217 |
acaagagaaagt |
228 |
Q |
| |
|
|||||| |||| |
|
|
| T |
4579792 |
gcaagagcaagt |
4579781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 77 - 228
Target Start/End: Complemental strand, 4598671 - 4598520
Alignment:
| Q |
77 |
tttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcga |
176 |
Q |
| |
|
|||||||||||| |||| |||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| || |||||||||| || |||| || |
|
|
| T |
4598671 |
tttgcttggggtttggccaatagcaagaaaccctttttgtggatcattaggcctgatcttgtcattggtggctcggttgttttgtcatcggagtttgtga |
4598572 |
T |
|
| Q |
177 |
atgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagt |
228 |
Q |
| |
|
|||||||||||||||||||| || | ||||| ||||||| |||||| |||| |
|
|
| T |
4598571 |
atgaaatttcagatagaggcttagttgcaagctggtgtctgcaagagcaagt |
4598520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 4571529 - 4571313
Alignment:
| Q |
20 |
gttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgtgga |
119 |
Q |
| |
|
||||||||||||||||| || |||| |||||||||||| | || |||| || ||||| |||||| | || ||||||||| ||| |||||||||| |
|
|
| T |
4571529 |
gttgtttatgtgaattttgggagcaggacagttatgacttcagaaaaactgttagagtttgcatggggtttagcaaatagcaagcaactctttttgtgga |
4571430 |
T |
|
| Q |
120 |
tcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtccaca |
219 |
Q |
| |
|
||| |||||| |||||||||||||| |||||||| |||||||||| || |||| ||||||||||||||||||||||||||| || ||||||| | || |
|
|
| T |
4571429 |
tcattaggcccgatcttgtcattggtggctcagttgttttgtcatcggagtttgtgaatgaaatttcagatagaggcctaattgctggttggtgctcgca |
4571330 |
T |
|
| Q |
220 |
agagaaagtgttgaacc |
236 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
4571329 |
agagaaagtattgaacc |
4571313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 4592788 - 4592580
Alignment:
| Q |
20 |
gttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgtgga |
119 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||| | ||| || | || |||||||||||| |||| ||| |||| ||||| |||||||||| |
|
|
| T |
4592788 |
gttgtttatgtgaatttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttggccaattgcaataaaccttttttgtgga |
4592689 |
T |
|
| Q |
120 |
tcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtccaca |
219 |
Q |
| |
|
||| ||||||||||||||||||||| ||| || | |||||||||| || |||| |||||||||||||||||||||| |||| || || |||||||| || |
|
|
| T |
4592688 |
tcattaggcctgatcttgtcattggtggcacaattgttttgtcatcggagtttgtgaatgaaatttcagatagaggcgtaatcgcgagctggtgtcctca |
4592589 |
T |
|
| Q |
220 |
agagaaagt |
228 |
Q |
| |
|
|||| |||| |
|
|
| T |
4592588 |
agagcaagt |
4592580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 98 - 236
Target Start/End: Complemental strand, 4568535 - 4568397
Alignment:
| Q |
98 |
agcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcc |
197 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||| | ||||||||||| |||||||| ||||||||||| || |||| ||||| || ||| |||||||||| |
|
|
| T |
4568535 |
agcaagaaaccttttttgtggatcattaggccttagcttgtcattggtggctcagttattttgtcatccgagtttgtgaatggaacttcggatagaggcc |
4568436 |
T |
|
| Q |
198 |
taatagcaagttggtgtccacaagagaaagtgttgaacc |
236 |
Q |
| |
|
||||||||| |||||||| |||||| |||||||||||| |
|
|
| T |
4568435 |
aaatagcaagctggtgtccgcaagagcaagtgttgaacc |
4568397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 4586193 - 4585977
Alignment:
| Q |
20 |
gttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgtgga |
119 |
Q |
| |
|
||||||||||||||||| || |||| |||||||||||| | || |||| || |||||||||||| |||| ||||||||| ||| ||||| |||| |
|
|
| T |
4586193 |
gttgtttatgtgaattttgggagcacaacagttatgactacagaaaaactattagagtttgcttggggtttggccaatagcaagcaacattttttatgga |
4586094 |
T |
|
| Q |
120 |
tcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtccaca |
219 |
Q |
| |
|
||| ||| ||||||||||||||||| || || || ||||||||||||| ||| ||||||||||||||||||||||||||| || ||||||| || || |
|
|
| T |
4586093 |
tcattagacctgatcttgtcattggtggttccttggttttgtcatctgagtttaagaatgaaatttcagatagaggcctaatcgcgggttggtgcccgca |
4585994 |
T |
|
| Q |
220 |
agagaaagtgttgaacc |
236 |
Q |
| |
|
|||| |||| ||||||| |
|
|
| T |
4585993 |
agagcaagtattgaacc |
4585977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 4470365 - 4470179
Alignment:
| Q |
15 |
gatctgttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccattttt |
114 |
Q |
| |
|
|||||||||| ||||| |||||||| ||| | ||||||||| |||| ||| |||| || |||||||||||| |||| ||||||||| |||| ||||| |
|
|
| T |
4470365 |
gatctgttgtctatgtaaatttcggcagcgtcacagttatgtctccagagaaactgttagagtttgcttggggtttggcaaatagcaagcaacccttttt |
4470266 |
T |
|
| Q |
115 |
gtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaat |
201 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||| || |||| ||||| || ||| |||| ||||||||||||||||||||| |
|
|
| T |
4470265 |
gtggatcattaggcccgatcttgtcattggcggctcggtagttttctcatcagagattgtaaatggaatttcagatagaggcctaat |
4470179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 4256196 - 4256347
Alignment:
| Q |
17 |
tctgttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgt |
116 |
Q |
| |
|
||||||||||| |||||||| || |||||||||||||||||||| || ||||| || ||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
4256196 |
tctgttgtttacgtgaattttggcagcattacagttatgactccagatcaactgttagagtttgcttggggattggccaatagcaagaaaccatttttgt |
4256295 |
T |
|
| Q |
117 |
ggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctga |
168 |
Q |
| |
|
| |||| ||||||||| || |||||||| ||||| | |||||||||||||| |
|
|
| T |
4256296 |
gtatcattaggcctgacctcgtcattggtggctcctttattttgtcatctga |
4256347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 4557682 - 4557501
Alignment:
| Q |
20 |
gttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgtgga |
119 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||||||| | || |||| || ||||| |||||| | || ||||||||| |||| |||||||||| |
|
|
| T |
4557682 |
gttgtttatgtgaattttgggagcatgacagttatgacggcagaaaaactgttagagtttgcatggggtttagcaaatagcaagcaaccctttttgtgga |
4557583 |
T |
|
| Q |
120 |
tcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaat |
201 |
Q |
| |
|
||| |||||| ||||||||||| || |||||||| |||||||||| || |||| |||||||||||||||||||||||||| |
|
|
| T |
4557582 |
tcattaggcccgatcttgtcatcggtggctcagttgttttgtcatcggagtttgtcaatgaaatttcagatagaggcctaat |
4557501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 4493346 - 4493296
Alignment:
| Q |
186 |
cagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaacc |
236 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||| || |||||| |
|
|
| T |
4493346 |
cagatagaggcctaattgctagttggtgtccacaagagaaactgctgaacc |
4493296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 1674788 - 1674567
Alignment:
| Q |
15 |
gatctgttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccattttt |
114 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||| ||||||||||| || ||||| ||| |||||||||||| |||| || |||||||||| ||||| |
|
|
| T |
1674788 |
gatcggttgtttatgtgaatttcggtagcattattgttatgactccagatcaactattggagtttgcttggggtttggccgattgcaagaaacctttttt |
1674689 |
T |
|
| Q |
115 |
gtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||| ||| |||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
1674688 |
gtggatcactaggcctgatcttgtcattggtggctcagtggttttgtcatctgagtttatgaaagaaatttcagatagaggcctaatatcaaattggtgt |
1674589 |
T |
|
| Q |
215 |
ccacaagagaaagtgttgaacc |
236 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
1674588 |
ccacaagagaaagtgttgaacc |
1674567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 77 - 236
Target Start/End: Original strand, 20863475 - 20863634
Alignment:
| Q |
77 |
tttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcga |
176 |
Q |
| |
|
||||| |||||| |||| || ||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||| ||||||| |||| || |
|
|
| T |
20863475 |
tttgcatggggtttggccaacagcaagaaaccctttttgtggatcattaggcctgatcttgtcattggtggctcggtgattttttcatctgcgtttgtga |
20863574 |
T |
|
| Q |
177 |
atgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaacc |
236 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||| |
|
|
| T |
20863575 |
atgaaatttcagatagaggcctaatcgcgagttggtgtccacaagagaaggtgttgaacc |
20863634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 16685842 - 16686050
Alignment:
| Q |
20 |
gttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgtgga |
119 |
Q |
| |
|
||||||||||||||||| || ||||| |||||||||||| | || |||| || |||||||||||| || | ||||||||| ||| ||| |||| |
|
|
| T |
16685842 |
gttgtttatgtgaattttgggagcatgacagttatgactgcagaaaaactattagagtttgcttggggtttgaccaatagcaagcaacattttcaatgga |
16685941 |
T |
|
| Q |
120 |
tcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtccaca |
219 |
Q |
| |
|
||| |||| |||||||||||||| |||| || ||| ||||||||||||| ||| ||||||||| ||||||||| ||||||| || || ||||| || || |
|
|
| T |
16685942 |
tcattaggtctgatcttgtcatttgcggttccgtggttttgtcatctgagtttaagaatgaaatctcagatagaagcctaatcgcgagctggtgcccgca |
16686041 |
T |
|
| Q |
220 |
agagaaagt |
228 |
Q |
| |
|
|||| |||| |
|
|
| T |
16686042 |
agagcaagt |
16686050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 3291 - 3502
Alignment:
| Q |
17 |
tctgttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgt |
116 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| | ||||| ||||||||||||||| |||| ||||||||||||| ||||||| |
|
|
| T |
3291 |
tctgttgtttatgtgaatttcggcagcattacagttatgactccaaatcaactgttagaatttgcttggggtttggccgatagcaagaaaccgtttttgt |
3390 |
T |
|
| Q |
117 |
ggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtcc |
216 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| | ||||||||||| || |||| ||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
3391 |
ggatcattaggcctgatcttgtcattggcggctcgtttattttgtcatcagaatttgagaatgaaatttcagatagaggcctaatcacaagctggtgtcc |
3490 |
T |
|
| Q |
217 |
acaagagaaagt |
228 |
Q |
| |
|
||||||| |||| |
|
|
| T |
3491 |
acaagagcaagt |
3502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 3086980 - 3086763
Alignment:
| Q |
17 |
tctgttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgt |
116 |
Q |
| |
|
|||||||||||||||| ||| || ||||||||||||||||||| |||||||| || |||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
3086980 |
tctgttgtttatgtgagttttggcagcattacagttatgactcaagagcaactattagagtttgcttggggtttggccaatagcaagaaaccatttttgt |
3086881 |
T |
|
| Q |
117 |
ggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtcc |
216 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| | ||| |||||||||| |||| ||| ||||||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
3086880 |
ggatcattaggcctgatcttgtcattggcggctcctttattatgtcatctgagtttgagaaagaaatttcagatagaggtctaatcgcaagctggtgtcc |
3086781 |
T |
|
| Q |
217 |
acaagagaaagtgttgaa |
234 |
Q |
| |
|
|||||| |||| ||||| |
|
|
| T |
3086780 |
gcaagagcaagtattgaa |
3086763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 4261 - 4469
Alignment:
| Q |
20 |
gttgtttatgtgaatttcggaagcattacagttatgactccggagcaacttcaggaatttgcttggggtctggctaatagcaagaaaccatttttgtgga |
119 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| || ||||| || |||||||||| | || | ||| | |||||| | |||||||||| |
|
|
| T |
4261 |
gttgtttatgtgaattttggaagcattacagttatgactccagatcaactgttagagtttgcttgggttttgaccaattgtaagaaatcctttttgtgga |
4360 |
T |
|
| Q |
120 |
tcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcctaatagcaagttggtgtccaca |
219 |
Q |
| |
|
||| ||||||||| ||||||||||||||||| | |||||||||||||| |||| ||||||||||||||||||||||||||| || || ||||||||||| |
|
|
| T |
4361 |
tcattaggcctgaccttgtcattggcggctcgtttattttgtcatctgagtttgagaatgaaatttcagatagaggcctaattgcgagctggtgtccaca |
4460 |
T |
|
| Q |
220 |
agagaaagt |
228 |
Q |
| |
|
|||| |||| |
|
|
| T |
4461 |
agagcaagt |
4469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 99 - 236
Target Start/End: Original strand, 27999753 - 27999890
Alignment:
| Q |
99 |
gcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcgaatgaaatttcagatagaggcct |
198 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||| ||| ||| |||||||||||||||||||| |
|
|
| T |
27999753 |
gcaagaaaccttttttgtggatcactaggcctaatcttgtcattggtggctcagtggttttgtcatctgagtttaggaaagaaatttcagatagaggcct |
27999852 |
T |
|
| Q |
199 |
aatagcaagttggtgtccacaagagaaagtgttgaacc |
236 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| ||||||| |
|
|
| T |
27999853 |
aatatcaaattggtgtccacaagagaaagttttgaacc |
27999890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 77 - 236
Target Start/End: Complemental strand, 24103499 - 24103340
Alignment:
| Q |
77 |
tttgcttggggtctggctaatagcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctcagtgattttgtcatctgactttgcga |
176 |
Q |
| |
|
|||||||||||| |||| ||||||||||| || ||||||||||| | ||||||||||||||||||||| |||||||| ||||||||||||| ||| | |
|
|
| T |
24103499 |
tttgcttggggtttggccaatagcaagaacccttttttgtggataattaggcctgatcttgtcattgggggctcagttgttttgtcatctgattttttta |
24103400 |
T |
|
| Q |
177 |
atgaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaacc |
236 |
Q |
| |
|
| ||| ||||||||||||| |||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
24103399 |
aagaagtttcagatagaggactaatagcaagttggtgtccacaagataaagtgttaaacc |
24103340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 3162 - 3261
Alignment:
| Q |
98 |
agcaagaaaccatttttgtggatcactaggcctgatcttgtcattggcggctca-gtgattttgtcatctgactttgcgaatgaaatttcagatagaggc |
196 |
Q |
| |
|
||||||||||| ||| ||||||||| |||| |||| |||||||||||||| ||| ||| ||||| || ||| |||| |||||||| ||||||||||||| |
|
|
| T |
3162 |
agcaagaaaccctttgtgtggatcattaggtctgaccttgtcattggcggatcatgtg-ctttgttatatgagtttgagaatgaaacttcagatagaggc |
3260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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