View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19247_high_19 (Length: 243)

Name: NF19247_high_19
Description: NF19247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19247_high_19
NF19247_high_19
[»] chr5 (5 HSPs)
chr5 (32-160)||(43599812-43599940)
chr5 (32-160)||(43605304-43605432)
chr5 (32-160)||(43610796-43610924)
chr5 (1-31)||(4549276-4549306)
chr5 (1-29)||(43514511-43514539)
[»] chr3 (3 HSPs)
chr3 (32-160)||(55338451-55338579)
chr3 (1-30)||(37628460-37628489)
chr3 (1-29)||(37627725-37627753)
[»] chr7 (1 HSPs)
chr7 (1-30)||(47676786-47676815)
[»] chr1 (4 HSPs)
chr1 (1-30)||(38459409-38459438)
chr1 (1-30)||(38461081-38461110)
chr1 (1-29)||(26853133-26853161)
chr1 (1-29)||(38460718-38460746)
[»] chr8 (1 HSPs)
chr8 (1-29)||(3528809-3528837)
[»] chr4 (1 HSPs)
chr4 (1-29)||(44891723-44891751)
[»] chr2 (1 HSPs)
chr2 (1-29)||(45628568-45628596)


Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 32 - 160
Target Start/End: Original strand, 43599812 - 43599940
Alignment:
Q  32 gtaactttattgcacggcaaatcaaagcatctggagtcacctattcattagaaacaaatacccctcaacattggtgaaccattcattcttggatatctgc 131  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43599812 gtaactttattgcactgcaaatcaaagcatctggagtcacctattcattagaaacaaatacccctcaacattggtgaaccattcattcttggatatctgc 43599911  T
Q  132 aatgtcgttgatctcctgtaaattggcac 160  Q
    |||||||||||||||||||||||||||||    
T  43599912 aatgtcgttgatctcctgtaaattggcac 43599940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 32 - 160
Target Start/End: Original strand, 43605304 - 43605432
Alignment:
Q  32 gtaactttattgcacggcaaatcaaagcatctggagtcacctattcattagaaacaaatacccctcaacattggtgaaccattcattcttggatatctgc 131  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43605304 gtaactttattgcactgcaaatcaaagcatctggagtcacctattcattagaaacaaatacccctcaacattggtgaaccattcattcttggatatctgc 43605403  T
Q  132 aatgtcgttgatctcctgtaaattggcac 160  Q
    |||||||||||||||||||||||||||||    
T  43605404 aatgtcgttgatctcctgtaaattggcac 43605432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 32 - 160
Target Start/End: Original strand, 43610796 - 43610924
Alignment:
Q  32 gtaactttattgcacggcaaatcaaagcatctggagtcacctattcattagaaacaaatacccctcaacattggtgaaccattcattcttggatatctgc 131  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43610796 gtaactttattgcactgcaaatcaaagcatctggagtcacctattcattagaaacaaatacccctcaacattggtgaaccattcattcttggatatctgc 43610895  T
Q  132 aatgtcgttgatctcctgtaaattggcac 160  Q
    |||||||||||||||||||||||||||||    
T  43610896 aatgtcgttgatctcctgtaaattggcac 43610924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 4549276 - 4549306
Alignment:
Q  1 tgttagggagtgtgtccctagcatttctctc 31  Q
    |||||||||||||||||||||||||||||||    
T  4549276 tgttagggagtgtgtccctagcatttctctc 4549306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 43514511 - 43514539
Alignment:
Q  1 tgttagggagtgtgtccctagcatttctc 29  Q
    |||||||||||||||||||||||||||||    
T  43514511 tgttagggagtgtgtccctagcatttctc 43514539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 32 - 160
Target Start/End: Complemental strand, 55338579 - 55338451
Alignment:
Q  32 gtaactttattgcacggcaaatcaaagcatctggagtcacctattcattagaaacaaatacccctcaacattggtgaaccattcattcttggatatctgc 131  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55338579 gtaactgtattgcacgacaaatcaaagcatctggagtcacctattcattagaaacaaatacccctcaacattggtgaaccattcattcttggatatctgc 55338480  T
Q  132 aatgtcgttgatctcctgtaaattggcac 160  Q
    |||||||||||||||||||||||||||||    
T  55338479 aatgtcgttgatctcctgtaaattggcac 55338451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 37628460 - 37628489
Alignment:
Q  1 tgttagggagtgtgtccctagcatttctct 30  Q
    ||||||||||||||||||||||||||||||    
T  37628460 tgttagggagtgtgtccctagcatttctct 37628489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 37627753 - 37627725
Alignment:
Q  1 tgttagggagtgtgtccctagcatttctc 29  Q
    |||||||||||||||||||||||||||||    
T  37627753 tgttagggagtgtgtccctagcatttctc 37627725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 47676815 - 47676786
Alignment:
Q  1 tgttagggagtgtgtccctagcatttctct 30  Q
    ||||||||||||||||||||||||||||||    
T  47676815 tgttagggagtgtgtccctagcatttctct 47676786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 38459438 - 38459409
Alignment:
Q  1 tgttagggagtgtgtccctagcatttctct 30  Q
    ||||||||||||||||||||||||||||||    
T  38459438 tgttagggagtgtgtccctagcatttctct 38459409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 38461081 - 38461110
Alignment:
Q  1 tgttagggagtgtgtccctagcatttctct 30  Q
    ||||||||||||||||||||||||||||||    
T  38461081 tgttagggagtgtgtccctagcatttctct 38461110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 26853133 - 26853161
Alignment:
Q  1 tgttagggagtgtgtccctagcatttctc 29  Q
    |||||||||||||||||||||||||||||    
T  26853133 tgttagggagtgtgtccctagcatttctc 26853161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 38460718 - 38460746
Alignment:
Q  1 tgttagggagtgtgtccctagcatttctc 29  Q
    |||||||||||||||||||||||||||||    
T  38460718 tgttagggagtgtgtccctagcatttctc 38460746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 3528809 - 3528837
Alignment:
Q  1 tgttagggagtgtgtccctagcatttctc 29  Q
    |||||||||||||||||||||||||||||    
T  3528809 tgttagggagtgtgtccctagcatttctc 3528837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 44891751 - 44891723
Alignment:
Q  1 tgttagggagtgtgtccctagcatttctc 29  Q
    |||||||||||||||||||||||||||||    
T  44891751 tgttagggagtgtgtccctagcatttctc 44891723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 45628568 - 45628596
Alignment:
Q  1 tgttagggagtgtgtccctagcatttctc 29  Q
    |||||||||||||||||||||||||||||    
T  45628568 tgttagggagtgtgtccctagcatttctc 45628596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University