View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19247_high_5 (Length: 440)
Name: NF19247_high_5
Description: NF19247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19247_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 13 - 421
Target Start/End: Original strand, 7305767 - 7306171
Alignment:
| Q |
13 |
aatatccattgacaagtgtaatttttgacttaaaccaaatttcaatcattaaaccacatcacatattgtatcgggatgccgttgctttaccaagctaggc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7305767 |
aatatccattgacaagtgtaatttttgacttaaaccaaatttcaatcatttaaccacatcacatattgtatcgggatgccgttgctttaccaagctaggc |
7305866 |
T |
|
| Q |
113 |
nnnnnnnncatatgacattaacatcataacacaatggaaagcagtaagttgaatcaaaatcagttgtcaaactaaaatagcaagatgacttatgaactat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7305867 |
aaaaaaaacatatgacattaacatcataacacaatggaaagcagtaagttgaatcaaaatcagttgtcaaactaaaatagcaagatgacccatgaactat |
7305966 |
T |
|
| Q |
213 |
taagataaatataattagtatactgcattggacataaactaatcagaacattgaaaatgttaggaatttggaatcttcagtacattagaataatcaaaca |
312 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7305967 |
taagataattataattagtatactgcattggacataaactaatcagaacattgaaaatgttaggaatttggaatgttcagtacattagaataatcaaaca |
7306066 |
T |
|
| Q |
313 |
cataaattgacaagaaaaattattgatgcacagactcttgaatttgacaaccttgatagcgagcgggtatacattgaaatgaaattctgagtaacaaatc |
412 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
7306067 |
cataaattgataagaaaaattattgatgcacagactcttgaatttgacaaccttgatagcga----gtatacattgaaatgaaattctcagtaacaaatc |
7306162 |
T |
|
| Q |
413 |
atgtatccc |
421 |
Q |
| |
|
||||||||| |
|
|
| T |
7306163 |
atgtatccc |
7306171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 8240593 - 8240553
Alignment:
| Q |
219 |
aaatataattagtatactgcattggacataaactaatcaga |
259 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
8240593 |
aaatataacgagcatactgcattggacataaactaatcaga |
8240553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University