View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19247_high_6 (Length: 364)
Name: NF19247_high_6
Description: NF19247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19247_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 26852739 - 26852392
Alignment:
| Q |
1 |
actccggaactatatgtattcagatattgccatttacgagaaatatatcttccctctaaatcaaccttgctttgtgtgactatacttttatagaacgtgt |
100 |
Q |
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| T |
26852739 |
actcctgaactatatgtattcagatattgccatttaccagaaatatatcttccctctaaatcaaccttgctttgtgtgactatacttttatagaacgtgt |
26852640 |
T |
|
| Q |
101 |
taaacagttagtaaccaacttannnnnnnaattcagaagtatgatgccctacaagatggctctcttttgtttgaaagtgagagccaaaaagatgtttcca |
200 |
Q |
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| T |
26852639 |
taaacagttagtaaccaacttatttttttaattcagaagtatgatgccctacaagatggctctcttttgtttgaaagtgagagccaaaaagatgtttcca |
26852540 |
T |
|
| Q |
201 |
cagtggcttctgatctgtctcatgatgttagacacagaagaacgtcaagtaaacggaacgaagagctctccacatctaacagtattataactgaatcaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26852539 |
cagtggcttctgatctgtctcatgatgttagacatagaagaacgtcaagtaaacggaacgaagagctctccacatctaacagtattataactgaatcaac |
26852440 |
T |
|
| Q |
301 |
acaagctggtgaactgatcagcagaacaaggataccagcagtgagttg |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26852439 |
acaagctggtgaactgatcagcagaacaaggataccagcagtgagttg |
26852392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Complemental strand, 54888963 - 54888930
Alignment:
| Q |
290 |
actgaatcaacacaagctggtgaactgatcagca |
323 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
54888963 |
actgaatcaacacaagctggtgaactgataagca |
54888930 |
T |
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