View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19247_high_7 (Length: 354)
Name: NF19247_high_7
Description: NF19247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19247_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 41378289 - 41378627
Alignment:
| Q |
1 |
caataatggtggcattattttgtttgcatgcatatttcattgcagattttttgggttatactatacttctcactaaaaataacaattgatatagtcgatc |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
41378289 |
caataatggtggcgttattttgtttgcatgcatatttcattgcagattttttgggttatactatacttctcactaaaaataacaattgatataattgatc |
41378388 |
T |
|
| Q |
101 |
atggcgatgaactcatcaaaattagaagggtcgtttctcattttctaacccaattctttacacagttttggatcattacattaccaattaagaaatagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41378389 |
atggcgatgaactcatcaaaattagaagggtcgtttctcattttctaacccaattctttacacagttttggatcattacattaccaattaggaaatagaa |
41378488 |
T |
|
| Q |
201 |
aagccgaggtgggtctcatctcatctcatttatcacaattaacacattcataacgttgatcaaacaaataagaatttctatattcacaaagttacatcgc |
300 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41378489 |
aagccaaggtggg-----tctcatctcatttatcacaattaacacattcataactttgatcaaacaaataagaatttctatattcacaaagttacatcgc |
41378583 |
T |
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| Q |
301 |
ataaccccacttcattcactatcctttaaacatcattatttcat |
344 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41378584 |
ataaccccacttcattcactatcctttaaacatcattatttcat |
41378627 |
T |
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