View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19247_high_9 (Length: 339)
Name: NF19247_high_9
Description: NF19247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19247_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 31605625 - 31605299
Alignment:
| Q |
1 |
aaattcaaggaaagatagttcttctatagattcgatgacaatttgtttgctggctatgattgctttcacaatatgtgttttacgtcccataatgttttgg |
100 |
Q |
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| T |
31605625 |
aaattcaaggaaagatagttcttctatagattcgatgacaatttgtttgctggctatgattgctttcacaatatgtgttttacgtcccataatgttttgg |
31605526 |
T |
|
| Q |
101 |
atgataagacaaacaccagaagggaaacaaattaaagaatcgtacatattttcggtatttttaatgttattaggctgctcgttatttagtgaagttattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31605525 |
atgataagacaaacaccagaagggaaacaaattaaagaatcgtacatactttcggtatttttaatgttattaggctgctcgttatttagtgaggttattg |
31605426 |
T |
|
| Q |
201 |
gagaacattttatgcttggtcctgtaatttttggcatggctgtacctgatggaccgccattaggatcagcattgactgaaagattggaaacaatggtgtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31605425 |
gagaacattttatgcttggtcctgtaatttttggcatggctgtacctgatggaccgccattaggatcagcattgactgaaagattggaaacaatggtgtc |
31605326 |
T |
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| Q |
301 |
aacaatatttttgccactgtactttct |
327 |
Q |
| |
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|||||||||||||||| |||||||||| |
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| T |
31605325 |
aacaatatttttgccattgtactttct |
31605299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 34 - 327
Target Start/End: Complemental strand, 31595828 - 31595535
Alignment:
| Q |
34 |
gatgacaatttgtttgctggctatgattgctttcacaatatgtgttttacgtcccataatgttttggatgataagacaaacaccagaagggaaacaaatt |
133 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||| |||||| ||||||||||||| |||||| ||| |||| |
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| T |
31595828 |
gatgacaatttgtttgctagctatgattgccttcacaatatgtgttctacgtcccataatgttgtggatggtaagacaaacacccgaagggcaaccaatt |
31595729 |
T |
|
| Q |
134 |
aaagaatcgtacatattttcggtatttttaatgttattaggctgctcgttatttagtgaagttattggagaacattttatgcttggtcctgtaatttttg |
233 |
Q |
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|||||||| ||| || |||||||| ||||||||||||| || ||||| ||||||| || ||||||||||||||||||| |||||| ||||||||| ||| |
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| T |
31595728 |
aaagaatcatacgtactttcggtaattttaatgttattggggtgctcattatttatggaggttattggagaacattttacgcttgggcctgtaattcttg |
31595629 |
T |
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| Q |
234 |
gcatggctgtacctgatggaccgccattaggatcagcattgactgaaagattggaaacaatggtgtcaacaatatttttgccactgtactttct |
327 |
Q |
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|| ||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
31595628 |
gcttggctgtacctgacgggcctccattaggatcagcattgactgaaagattggaaacaatggtgtcaaaaatatttttgccattgtactttct |
31595535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 89 - 301
Target Start/End: Complemental strand, 31579911 - 31579699
Alignment:
| Q |
89 |
ataatgttttggatgataagacaaacaccagaagggaaacaaattaaagaatcgtacatattttcggtatttttaatgttattaggctgctcgttattta |
188 |
Q |
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||||||||||||||||||||| ||||||| ||||| |||| ||| |||||||| ||||||||||| || ||||||||| |||| |||||||| ||||||| |
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| T |
31579911 |
ataatgttttggatgataagaaaaacacctgaaggaaaaccaatcaaagaatcatacatattttcagtgtttttaatgatattgggctgctcattattta |
31579812 |
T |
|
| Q |
189 |
gtgaagttattggagaacattttatgcttggtcctgtaatttttggcatggctgtacctgatggaccgccattaggatcagcattgactgaaagattgga |
288 |
Q |
| |
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|||| |||||||||||||||| |||| |||||||||||||||| || |||||||||||||||| || |||||||||||||||||||||||||| ||||| |
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| T |
31579811 |
gtgaggttattggagaacattatatgattggtcctgtaattttaggtctggctgtacctgatgggcctccattaggatcagcattgactgaaaggttgga |
31579712 |
T |
|
| Q |
289 |
aacaatggtgtca |
301 |
Q |
| |
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|||| |||||| |
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| T |
31579711 |
tgcaattgtgtca |
31579699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 55 - 297
Target Start/End: Complemental strand, 31564411 - 31564169
Alignment:
| Q |
55 |
tatgattgctttcacaatatgtgttttacgtcccataatgttttggatgataagacaaacaccagaagggaaacaaattaaagaatcgtacatattttcg |
154 |
Q |
| |
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|||| ||| ||||| |||||||||| | | ||||||||| |||||||| ||||| ||||||||||||| |||| ||| |||||||| |||||| | || |
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| T |
31564411 |
tatggttgttttcataatatgtgttcttagacccataatgctttggatggtaagaaaaacaccagaaggaaaaccaatcaaagaatcatacataatgtct |
31564312 |
T |
|
| Q |
155 |
gtatttttaatgttattaggctgctcgttatttagtgaagttattggagaacattttatgcttggtcctgtaatttttggcatggctgtacctgatggac |
254 |
Q |
| |
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|| |||||||||||| | |||||| | || ||||||| | || |||||||||| | | | || |||| ||||| || ||||||||||||||||||| |
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| T |
31564311 |
gtgtttttaatgttactcggctgcgcatttgttagtgagttaatcggagaacattatttagtcgggactgttattttcggtatggctgtacctgatggac |
31564212 |
T |
|
| Q |
255 |
cgccattaggatcagcattgactgaaagattggaaacaatggt |
297 |
Q |
| |
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| ||||||||||||||||||||||| |||||||| |||||||| |
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| T |
31564211 |
ctccattaggatcagcattgactgatagattggatacaatggt |
31564169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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