View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19247_low_13 (Length: 287)
Name: NF19247_low_13
Description: NF19247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19247_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 35 - 270
Target Start/End: Complemental strand, 4190311 - 4190062
Alignment:
| Q |
35 |
gaaaataacaaactaagcaacatatatttaaataatatcaaaagcataacttattaaaattaggtttacaagtgaatattatataataaaatctaaaagg |
134 |
Q |
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| T |
4190311 |
gaaaataacaaacgaggcaacatagatttaaataatatcaaaagcataacttattaaaattaggtttacaagtgaatattatataataaaatctaaaagg |
4190212 |
T |
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| Q |
135 |
actcaattcacttaaaccctaaaaagat--------------cccacatcttattatctaacacattgcacttgcatcccaaaatcaattggagcatagt |
220 |
Q |
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| T |
4190211 |
actcgattcacttaaaccctaaaaagatccaacaacatgagcccgacatcttattatctaacacattgcacttgcatcccacaatcaattggagcatagt |
4190112 |
T |
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| Q |
221 |
ccttcaagaaacaaattgctaaagagatccattacatgcttattaagaac |
270 |
Q |
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| T |
4190111 |
ccttcaagaaacaaattgctaaagagatccattacatgcttattaagaac |
4190062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 4193234 - 4193182
Alignment:
| Q |
218 |
agtccttcaagaaacaaattgctaaagagatccattacatgcttattaagaac |
270 |
Q |
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| T |
4193234 |
agtccttcaaaaaagaaactgctaaagagatccattacaagcttattaagaac |
4193182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 4234743 - 4234691
Alignment:
| Q |
218 |
agtccttcaagaaacaaattgctaaagagatccattacatgcttattaagaac |
270 |
Q |
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| T |
4234743 |
agtccttcaacaaacaaagttctaaagagattcattacatggttattaagaac |
4234691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 4247325 - 4247269
Alignment:
| Q |
214 |
gcatagtccttcaagaaacaaattgctaaagagatccattacatgcttattaagaac |
270 |
Q |
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| T |
4247325 |
gcataatccttcatgaaacaaagtgctaaagaaattcattacatgtttattaagaac |
4247269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 4251754 - 4251706
Alignment:
| Q |
220 |
tccttcaagaaacaaattgctaaagagatccattacatgcttattaaga |
268 |
Q |
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| T |
4251754 |
tccttcaagaaacaaagtgctaaagatatccattacaggtttattaaga |
4251706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 4211079 - 4211027
Alignment:
| Q |
218 |
agtccttcaagaaacaaattgctaaagagatccattacatgcttattaagaac |
270 |
Q |
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| T |
4211079 |
agtccttcaagaaacaacgttttaaagagatccattacatgtttatttagaac |
4211027 |
T |
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