View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19247_low_19 (Length: 246)

Name: NF19247_low_19
Description: NF19247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19247_low_19
NF19247_low_19
[»] chr2 (9 HSPs)
chr2 (1-223)||(6915277-6915499)
chr2 (78-176)||(10543505-10543603)
chr2 (78-176)||(10471307-10471405)
chr2 (78-176)||(28106207-28106305)
chr2 (96-176)||(27966389-27966469)
chr2 (78-176)||(10859023-10859121)
chr2 (97-159)||(9081351-9081413)
chr2 (182-223)||(10507349-10507390)
chr2 (105-169)||(10505487-10505551)
[»] chr7 (3 HSPs)
chr7 (78-176)||(15044800-15044898)
chr7 (5-81)||(15043985-15044061)
chr7 (178-220)||(15045570-15045612)
[»] chr5 (1 HSPs)
chr5 (78-176)||(33601026-33601124)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6915499 - 6915277
Alignment:
Q  1 ttaactgaccaaacttcctttgctccaacttgaaagccaatgctacaaggggcccatcgggacttccagtcagctgaaccttctcctcattcttggattg 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915499 ttaactgaccaaacttcgtttgctccaacttgaaagccaatgctacaagaggcccatcgggacttccagtcagctgaaccttctcctcattcttggattg 6915400  T
Q  101 gtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtacccccgtgtttttgacagcactacccatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915399 gtcaagagcataattactaacttcaatcggacaaggcaaataactaactacaccatccagaagtggttgtacccccgtgtttttgacagcactacccatg 6915300  T
Q  201 aataccggtataaatttccgtgc 223  Q
    |||||||||||||||||||||||    
T  6915299 aataccggtataaatttccgtgc 6915277  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 78 - 176
Target Start/End: Original strand, 10543505 - 10543603
Alignment:
Q  78 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 176  Q
    ||||| |||||||||||||||||| | ||||||||||||||| ||||| | ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  10543505 accttttcctcattcttggattggacgagagcataattactagcttcagttggacacggcaaataattaagtacaccatccaaaagtagttgtaacccc 10543603  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 78 - 176
Target Start/End: Original strand, 10471307 - 10471405
Alignment:
Q  78 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 176  Q
    ||||| ||||||||||| |||||| | ||||||||||||||| ||||| | ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  10471307 accttttcctcattcttagattggacgagagcataattactagcttcagttggacacggcaaataattaagtacaccatccaaaagtagttgtagcccc 10471405  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 78 - 176
Target Start/End: Complemental strand, 28106305 - 28106207
Alignment:
Q  78 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 176  Q
    ||||| ||| ||| ||| ||||||||||||| |||||||||| ||||||| ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  28106305 accttttccccatgcttagattggtcaagagtataattactagcttcaattggacacggcaaataattaattacaccatccaaaagtagttgtagcccc 28106207  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 96 - 176
Target Start/End: Original strand, 27966389 - 27966469
Alignment:
Q  96 gattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 176  Q
    ||||||||||||| |||||||||| ||||||| ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  27966389 gattggtcaagagtataattactagcttcaattggacacggcaaataattaattacaccatccaaaagtagttgtagcccc 27966469  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 176
Target Start/End: Original strand, 10859023 - 10859121
Alignment:
Q  78 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 176  Q
    ||||| ||| ||||||| |||| ||| |||| |||||||||||||||| | ||||| ||||||||| ||  ||||||||||| |||| |||||| ||||    
T  10859023 accttttccccattcttagatttgtcgagagaataattactaacttcagttggacagggcaaataattagttacaccatccaaaagtagttgtagcccc 10859121  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 9081413 - 9081351
Alignment:
Q  97 attggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatcca 159  Q
    ||||||| || |||||||||||  ||||||| ||||| ||||||||| ||| |||||||||||    
T  9081413 attggtcgagcgcataattacttgcttcaattggacacggcaaataattaagtacaccatcca 9081351  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 10507349 - 10507390
Alignment:
Q  182 tttgacagcactacccatgaataccggtataaatttccgtgc 223  Q
    ||||| |||||| ||||||||||| |||||||||||||||||    
T  10507349 tttgaaagcactgcccatgaatacgggtataaatttccgtgc 10507390  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 10505487 - 10505551
Alignment:
Q  105 agagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttg 169  Q
    ||||||||||||||| ||||| | ||||| ||||||||| |||  |||||||||| |||| ||||    
T  10505487 agagcataattactagcttcagttggacacggcaaataattaagcacaccatccaaaagtagttg 10505551  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 78 - 176
Target Start/End: Original strand, 15044800 - 15044898
Alignment:
Q  78 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 176  Q
    ||||||||||| || || ||||||||||| ||||||||| |||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||| ||||    
T  15044800 accttctcctccttattagattggtcaagggcataattattaacttcaattggacatggcaaataactaagtacaccatccagaagtggttgtatcccc 15044898  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 15043985 - 15044061
Alignment:
Q  5 ctgaccaaacttcctttgctccaacttgaaagccaatgctacaaggggcccatcgggacttccagtcagctgaacct 81  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| | |||| ||||| |||||    
T  15043985 ctgaccaaacttactttcctccaacttgaaagccaatgctacaaggggcccatcaggattaccaggcagctcaacct 15044061  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 15045570 - 15045612
Alignment:
Q  178 tgtttttgacagcactacccatgaataccggtataaatttccg 220  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  15045570 tgtttttgaaagcactacccatgaataccggtataaatttccg 15045612  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 176
Target Start/End: Original strand, 33601026 - 33601124
Alignment:
Q  78 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 176  Q
    ||||| ||||||||||| ||||||   |||||||||||| |  ||||| | ||||| ||||||| | |||  |||||||||| ||||||||||| ||||    
T  33601026 accttttcctcattcttagattggatgagagcataattagttgcttcagttggacacggcaaattattaagcacaccatccaaaagtggttgtagcccc 33601124  T

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