View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19247_low_21 (Length: 244)
Name: NF19247_low_21
Description: NF19247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19247_low_21 |
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| [»] scaffold0421 (1 HSPs) |
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| [»] scaffold0122 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 39438822 - 39438609
Alignment:
| Q |
14 |
attattctcacctcatttgagagaagcttgaactatagttcattcctctcttatgttaaaagatacactctctttctttnnnnnnngtttgaattacatt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
39438822 |
attattctcacctcatttgagagaagcttgaactatagttcattcctctcttatgttaaaagatacactccttttctttaaaaaaagtttgaattacatt |
39438723 |
T |
|
| Q |
114 |
tccctcctacaaaaacatgtcttgctccaagtccatattataaaaacattgaatttttaataagacttaattgggaaaaagggatttactcgagagagat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
39438722 |
tccctcctacaaaaacatgtcttgctccaagtccatattataaaaacattgaatttttaataagacttaattggaaaaaagggatttactcgagagatat |
39438623 |
T |
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| Q |
214 |
aagacctaaaaggt |
227 |
Q |
| |
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|||||||||||||| |
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| T |
39438622 |
aagacctaaaaggt |
39438609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 14187600 - 14187379
Alignment:
| Q |
14 |
attattctcacctcatttgagagaagcttgaactatagttcattcctctcttatgttaaaagatacactctctttctttnnnnnnngtttgaattacatt |
113 |
Q |
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||||||||||||| |||| ||||||| |||| ||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
14187600 |
attattctcaccttatttaagagaagtttgacctatagttcattcctcttttatgttaaaagatacactccctttctttaaaaaaagtttgaattacatt |
14187501 |
T |
|
| Q |
114 |
tccctccta--------caaaaacatgtcttgctccaagtccatattataaaaacattgaatttttaataagacttaattgggaaaaagggatttactcg |
205 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14187500 |
tccctcttattataatacaaaaacatgtcttgctccaagtccatattataaaaacattgaatttttaataagacttaattgggaaaaaggaatttactcg |
14187401 |
T |
|
| Q |
206 |
agagagataagacctaaaaggt |
227 |
Q |
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||| |||||||||||||||||| |
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| T |
14187400 |
agatagataagacctaaaaggt |
14187379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 7762 - 7560
Alignment:
| Q |
14 |
attattctcacctcatttgagagaagcttgaactatagttcattcctctcttatgttaaaagatacactctctttctttnnnnnnngtttgaattacatt |
113 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||| |||||| ||||||| |
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| T |
7762 |
attattctcacctcatttaagagaagcttgaattatagttcattcatctcttatgttaaaagatacactccctttctttaaaaaaagtttgagttacatt |
7663 |
T |
|
| Q |
114 |
tccctccta--------caaaaacatgtcttgctccaagtccatattataaaaacattgaatttttaataagacttaattgggaaaaagggatttactcg |
205 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||| |||||||||| |
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| T |
7662 |
tccctcctattataatacaaaaacatgtcttgatccaagtccatattataaaaacattgaacttttagtaagacttaattgagaaaaagtgatttactcg |
7563 |
T |
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| Q |
206 |
aga |
208 |
Q |
| |
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||| |
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|
| T |
7562 |
aga |
7560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0122 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0122
Description:
Target: scaffold0122; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 30417 - 30199
Alignment:
| Q |
14 |
attattctcacctcatttgagagaagcttgaactatagttcattcctctcttatgttaaaa---gatacactctctttctttnnnnnnngtttgaattac |
110 |
Q |
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||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| |||| |
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| T |
30417 |
attattctcgcctcatttaagagaagcttgaactatagttcattcctctcttatgtttttttcggatacactccctttctttaaaaaaa-tttgagttac |
30319 |
T |
|
| Q |
111 |
atttccctccta--------caaaaacatgtcttgctccaagtccatattataaaaacattgaatttttaataagacttaattgggaaaaagggatttac |
202 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||| || | | | |||||||||||||||||||||||||||||||||||| |
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| T |
30318 |
atttccctcctattataatacaaaaacatttcttgctccaagtccataata-----agactctctttttaataagacttaattgggaaaaagggatttac |
30224 |
T |
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| Q |
203 |
tcgagagagataagacctaaaaggt |
227 |
Q |
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|||||| |||||||||||||||||| |
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| T |
30223 |
tcgagatagataagacctaaaaggt |
30199 |
T |
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