View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19247_low_23 (Length: 234)

Name: NF19247_low_23
Description: NF19247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19247_low_23
NF19247_low_23
[»] chr2 (2 HSPs)
chr2 (75-234)||(4775009-4775168)
chr2 (1-55)||(4774861-4774915)


Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 75 - 234
Target Start/End: Original strand, 4775009 - 4775168
Alignment:
Q  75 tgattttaaaatcgaacctgagtttgaattggtgaaacttctcaaccatgatttgattgctttagttgattcaataacatttcaatgggagaagtaataa 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4775009 tgattttaaaatcgaacctgagtttgaattggtgaaacttctcaaccatgacttgattgctttagttgattcaataacatttcaatgggagaagtaataa 4775108  T
Q  175 atcatcatctgacctaaaatttatacacagactgacctaagattttatttgagcataata 234  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4775109 atcatcatctgacctaaaatttatacactgactgacctaagattttatttgagcataata 4775168  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 4774861 - 4774915
Alignment:
Q  1 cattgtgtcgaatattattggacttgcaataatatatgatatagatgactttgaa 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4774861 cattgtgtcgaatattattggacttgcaataatatatgatatagatgactttgaa 4774915  T

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