View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19247_low_3 (Length: 564)
Name: NF19247_low_3
Description: NF19247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19247_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 14 - 548
Target Start/End: Original strand, 55067175 - 55067715
Alignment:
| Q |
14 |
cagcacagaaacaacttgagtgaaaatttgtgctgggatcaagtgcatta---tactactaggagagagtgtagcatgttaattaaataaaggaattgat |
110 |
Q |
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| T |
55067175 |
cagcacagaaacaacttgagtgaaaatttgtgctgggatcaagtgcattattatactactaggagagagtgtagcatgttaattaaataaaggaattgat |
55067274 |
T |
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| Q |
111 |
gacatgtggcaaagcaaaaggacgtttgttattagcaattagtaatttagtagtagaaggctgagagatggttggtcaggaaagggccaaagtggaaaca |
210 |
Q |
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| T |
55067275 |
gacatgtggcaaagcaaaaggacgtttgttattagcaattagtaatttagtagtagaaggctgagagatggttggtcaggaaagggccaaagtggaaaca |
55067374 |
T |
|
| Q |
211 |
gaacagcacaaacttacaattgcaaaacatagaagaacggtaaatatagtaattcttaccctgcttcctctctcaaaagattcatcctccaaaaagcgta |
310 |
Q |
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| T |
55067375 |
gaacagcacaaacttacaattgcaaaacatagaagaacggtaaatatagtaattcttaccctgcttcctctctcaaaagattcatcctccaaaaagcgta |
55067474 |
T |
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| Q |
311 |
tctcaggagttaaccgcaacttcatacgcctccccaactcaccgcgaacatatttggcttttgatttcaacccagctatggccacttccttccctctttc |
410 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
55067475 |
tctcaggagttaaccgcaacttcatacgcctccctaactcaccgcgaacatatttggcttttgatttcaacccagccatggccacttccttccctctttc |
55067574 |
T |
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| Q |
411 |
atctccaaaaacagatacatacaccctagccacctagacgcagtattacata---catcacatttatgttatgaaacaaaattaataaggttagatgaga |
507 |
Q |
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| T |
55067575 |
atctccaaaaacagatacataaaccctagccacctagacgcagtattacatacatcatcacagttatgttatgaaacaaaattaataagattagatgaga |
55067674 |
T |
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| Q |
508 |
aaaatgaaaaggcaatgtggcaattaaattcaggtctatga |
548 |
Q |
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| T |
55067675 |
aaaatgaaaaggcaatgtggcaattaaattcaggtctatga |
55067715 |
T |
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