View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19247_low_4 (Length: 456)
Name: NF19247_low_4
Description: NF19247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19247_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 13395113 - 13394689
Alignment:
| Q |
18 |
atgtgttctgcacacatttttcgcttagagggtcaagtcatacattttcgcaatttccaaataatataacctctaatcctgctattctttctcatcagga |
117 |
Q |
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| T |
13395113 |
atgtgttctgcacgcatttttcgcttagagggtcaagtcatacattttcgcaatttccaaataataaaacctctaatcctgctattctttctcatcagga |
13395014 |
T |
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| Q |
118 |
agcctctactccaggtataaacaccattttctccaatactttaaaatttcaaactcctatatggcggctcattgactctggtgcaaatgaacatatatgg |
217 |
Q |
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| T |
13395013 |
agcctctactccaggtataaacaccattttctccaatactttaaaatttcaaactcctatatggc---tcattgactctggtgcaaatgaacatatatgg |
13394917 |
T |
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| Q |
218 |
ctcatcttgaaaagacattttatatttaatcacaatcagtgattatatatgcttaggtagatattattgacatatttagaaaatggggtaaactcgtgca |
317 |
Q |
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| T |
13394916 |
ctcatcttgaaaagacattttatatttaatcacaatcagtgattatatatgcttaggtagatattattgacatatttagaaaatggggtaaactcgtgca |
13394817 |
T |
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| Q |
318 |
agacacaagttcttgcactagttgtaacaagttgaaattcacatcataaaacaaatacattattctataacagaaaaatacattattcattcacatatat |
417 |
Q |
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| T |
13394816 |
agacacaagttcttgcactagttgtaacaagttgaaattcacatcataaaacacatacattattctataacag-aaaatacattattcattcacatatat |
13394718 |
T |
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| Q |
418 |
gtgaatagtgctgaatttgaatccctatg |
446 |
Q |
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| T |
13394717 |
gtgaatagtgctgaatttgaatccctatg |
13394689 |
T |
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