View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19248_high_4 (Length: 353)
Name: NF19248_high_4
Description: NF19248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19248_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 50717710 - 50717403
Alignment:
| Q |
1 |
gcaagtgtccgtcgtatatgagagatcacaaaggacaagacatgaaacctccttccacaagggaaaaggttgttgtgtgtgggggtgtcacacaaggttt |
100 |
Q |
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| T |
50717710 |
gcaagtgtccgtcgtatatgagagatcacaaaggacaagacatgaaacctccttccacaagggaaaaggttgttgtgtgtgggggtgtcacacaaggttt |
50717611 |
T |
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| Q |
101 |
gaaattttacgctaaggaacaatggagcaaagttgagttcagaagttgccttttcccttaaggaaactttaagctaatggccatatatgcacgaaaatgg |
200 |
Q |
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| T |
50717610 |
gaaattttacgctaaggaacaatggagcaaagttgagttcagaagttgcctcttcccttaaggaaactttaagctaatggccatatatgcacgaaaattg |
50717511 |
T |
|
| Q |
201 |
tacgtcacatgtgtgcttttcacaatggatcccaacatttgggtgcaactaaatcatatacatagannnnnnnngaagaaca-ataaatatatttatttc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||| |
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| T |
50717510 |
tacgtcacatgtgtgcttttcacaatggatcccaacatttgggtgcaactaaatcatatacatagattttttttgaagaacatataactatatttatttc |
50717411 |
T |
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| Q |
300 |
catttaaa |
307 |
Q |
| |
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|||||||| |
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| T |
50717410 |
catttaaa |
50717403 |
T |
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