View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19248_high_7 (Length: 250)

Name: NF19248_high_7
Description: NF19248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19248_high_7
NF19248_high_7
[»] chr1 (1 HSPs)
chr1 (38-239)||(48192774-48192975)
[»] chr5 (2 HSPs)
chr5 (55-187)||(10005780-10005905)
chr5 (160-239)||(37464134-37464218)
[»] chr6 (3 HSPs)
chr6 (198-239)||(33978772-33978813)
chr6 (160-239)||(249680-249762)
chr6 (134-175)||(11682973-11683014)
[»] chr4 (7 HSPs)
chr4 (198-239)||(19590680-19590721)
chr4 (160-239)||(10259727-10259809)
chr4 (160-239)||(21564646-21564728)
chr4 (160-239)||(24077796-24077878)
chr4 (160-239)||(26924666-26924748)
chr4 (188-239)||(28120597-28120648)
chr4 (160-239)||(43332167-43332249)
[»] chr8 (3 HSPs)
chr8 (160-239)||(20663321-20663403)
chr8 (160-239)||(30548684-30548766)
chr8 (160-239)||(44213438-44213520)
[»] chr7 (6 HSPs)
chr7 (160-239)||(19034049-19034131)
chr7 (160-239)||(20720505-20720587)
chr7 (160-239)||(29490745-29490827)
chr7 (160-239)||(33230355-33230437)
chr7 (201-239)||(20765211-20765249)
chr7 (201-239)||(34282497-34282535)
[»] chr3 (1 HSPs)
chr3 (160-239)||(918454-918536)
[»] chr2 (3 HSPs)
chr2 (160-239)||(3710714-3710796)
chr2 (160-239)||(11866620-11866702)
chr2 (160-239)||(35358013-35358095)


Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 38 - 239
Target Start/End: Complemental strand, 48192975 - 48192774
Alignment:
Q  38 tattgtcttttgattgtgagaatgagactgaatttcaataaaagaaatatgaaaatgaatttgataccgagtttcttgagagattgactatcagtgttat 137  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48192975 tattgtcttttgaatgtgagaatgagactgaatttcaataaaagaaatatgaaaatgaatttgataccgagtttcttgagagattgactatcagtgttat 48192876  T
Q  138 tcatttataagctataactgtacaattggaatccattgattatagacattatatgttttcttcttttgtttggtttatcactatagccaaatatgatttc 237  Q
    |||||||||||||||||||||||||||||||||||||||||| | |  | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48192875 tcatttataagctataactgtacaattggaatccattgattagacatttaatatgttttcttcttttgtttggtttatcactatagccaaatatgatttc 48192776  T
Q  238 at 239  Q
    ||    
T  48192775 at 48192774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 187
Target Start/End: Complemental strand, 10005905 - 10005780
Alignment:
Q  55 gagaatgagactgaatttcaataaaagaaatatgaaaatgaatttgataccgagtttcttgagagattgactatcagtgttattcatttataagctataa 154  Q
    |||||||||  ||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||| |||||||| |||||  |||||||||          
T  10005905 gagaatgaggttgaatttcaataaaaaaaaaatggaaatgaatttgataccgagtttcttgagagattaactatcagcgttatgaatttataag------ 10005812  T
Q  155 ctgtacaattggaatccattgattatagacatt 187  Q
     |||||||||||||||| |||||||||| ||||    
T  10005811 -tgtacaattggaatccgttgattataggcatt 10005780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 37464134 - 37464218
Alignment:
Q  160 caattggaatccattgattatagacatt--atatg---ttttcttcttttgtttggtttatcactatagccaaatatgatttcat 239  Q
    ||||| |||||||||||||||||  |||  |||||   |||| || ||||||||| || ||||||||||||||||||||||||||    
T  37464134 caattagaatccattgattataggtatttaatatgcttttttttttttttgtttgcttgatcactatagccaaatatgatttcat 37464218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 33978772 - 33978813
Alignment:
Q  198 ttcttttgtttggtttatcactatagccaaatatgatttcat 239  Q
    |||||||||||| || ||||||||||||||||||||||||||    
T  33978772 ttcttttgtttgcttgatcactatagccaaatatgatttcat 33978813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 249680 - 249762
Alignment:
Q  160 caattggaatccattgattatagacatt--atatgttt-tcttcttttgtttggtttatcactatagccaaatatgatttcat 239  Q
    ||||| |||||||||||||||||  |||  ||||| || | || ||||||||| || ||||||||||||||||||||||||||    
T  249680 caattagaatccattgattataggtatttaatatgcttctttttttttgtttgcttgatcactatagccaaatatgatttcat 249762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 11682973 - 11683014
Alignment:
Q  134 ttattcatttataagctataactgtacaattggaatccattg 175  Q
    ||||| ||||||| ||||||||||| ||||||||||||||||    
T  11682973 ttattaatttataggctataactgtgcaattggaatccattg 11683014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 19590680 - 19590721
Alignment:
Q  198 ttcttttgtttggtttatcactatagccaaatatgatttcat 239  Q
    |||||||||||| || ||||||||||||||||||||||||||    
T  19590680 ttcttttgtttgcttgatcactatagccaaatatgatttcat 19590721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 10259809 - 10259727
Alignment:
Q  160 caattggaatccattgattatagacatt--atatgttt-tcttcttttgtttggtttatcactatagccaaatatgatttcat 239  Q
    ||||| |||||||||||||||||  |||  ||||| || | || ||||||||| || ||||||||||||||||||||||||||    
T  10259809 caattagaatccattgattataggtatttaatatgcttctttttttttgtttgcttgatcactatagccaaatatgatttcat 10259727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 21564646 - 21564728
Alignment:
Q  160 caattggaatccattgattatagacatt--atatgttt-tcttcttttgtttggtttatcactatagccaaatatgatttcat 239  Q
    ||||| |||||||||||||||||  |||  ||||| || | || ||||||||| || ||||||||||||||||||||||||||    
T  21564646 caattagaatccattgattataggtatttaatatgcttctttttttttgtttgcttgatcactatagccaaatatgatttcat 21564728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 24077878 - 24077796
Alignment:
Q  160 caattggaatccattgattatagacatt--atatgttt-tcttcttttgtttggtttatcactatagccaaatatgatttcat 239  Q
    ||||| |||||||||||||||||  |||  ||||| || | || ||||||||| || ||||||||||||||||||||||||||    
T  24077878 caattagaatccattgattataggtatttaatatgcttctttttttttgtttgcttgatcactatagccaaatatgatttcat 24077796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 26924748 - 26924666
Alignment:
Q  160 caattggaatccattgattatagacatt--atatgttt-tcttcttttgtttggtttatcactatagccaaatatgatttcat 239  Q
    ||||| |||||||||||||||||  |||  ||||| || | || ||||||||| || ||||||||||||||||||||||||||    
T  26924748 caattagaatccattgattataggtatttaatatgcttctttttttttgtttgcttgatcactatagccaaatatgatttcat 26924666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 28120648 - 28120597
Alignment:
Q  188 atatgttttcttcttttgtttggtttatcactatagccaaatatgatttcat 239  Q
    ||||| || ||| ||||||||| || ||||||||||||||||||||||||||    
T  28120648 atatgcttcctttttttgtttgcttgatcactatagccaaatatgatttcat 28120597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 43332167 - 43332249
Alignment:
Q  160 caattggaatccattgattatagacatt--atatgttt-tcttcttttgtttggtttatcactatagccaaatatgatttcat 239  Q
    ||||| |||||||||||||||||  |||  ||||| || | || ||||||||| || ||||||||||||||||||||||||||    
T  43332167 caattagaatccattgattataggtatttaatatgcttctttttttttgtttgcttgatcactatagccaaatatgatttcat 43332249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 20663403 - 20663321
Alignment:
Q  160 caattggaatccattgattatagacatt--atatgttt-tcttcttttgtttggtttatcactatagccaaatatgatttcat 239  Q
    ||||| |||||||||||||||||  |||  ||||| || | || ||||||||| || ||||||||||||||||||||||||||    
T  20663403 caattagaatccattgattataggtatttaatatgcttctttttttttgtttgcttgatcactatagccaaatatgatttcat 20663321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 30548766 - 30548684
Alignment:
Q  160 caattggaatccattgattatagacatt--atatgttt-tcttcttttgtttggtttatcactatagccaaatatgatttcat 239  Q
    ||||| |||||||||||||||||  |||  ||||| || | || ||||||||| || ||||||||||||||||||||||||||    
T  30548766 caattagaatccattgattataggtatttaatatgcttctttttttttgtttgcttgatcactatagccaaatatgatttcat 30548684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 44213520 - 44213438
Alignment:
Q  160 caattggaatccattgattatagacatt--atatgttt-tcttcttttgtttggtttatcactatagccaaatatgatttcat 239  Q
    ||||| |||||||||||||||||  |||  ||||| || | || ||||||||| || ||||||||||||||||||||||||||    
T  44213520 caattagaatccattgattataggtatttaatatgcttctttttttttgtttgcttgatcactatagccaaatatgatttcat 44213438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 19034131 - 19034049
Alignment:
Q  160 caattggaatccattgattatagacatt--atatgttt-tcttcttttgtttggtttatcactatagccaaatatgatttcat 239  Q
    ||||| |||||||||||||||||  |||  ||||| || | || ||||||||| || ||||||||||||||||||||||||||    
T  19034131 caattagaatccattgattataggtatttaatatgcttctttttttttgtttgcttgatcactatagccaaatatgatttcat 19034049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 20720505 - 20720587
Alignment:
Q  160 caattggaatccattgattatagacatt--atatgttt-tcttcttttgtttggtttatcactatagccaaatatgatttcat 239  Q
    ||||| |||||||||||||||||  |||  ||||| || | || ||||||||| || ||||||||||||||||||||||||||    
T  20720505 caattagaatccattgattataggtatttaatatgcttctttttttttgtttgcttgatcactatagccaaatatgatttcat 20720587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 29490745 - 29490827
Alignment:
Q  160 caattggaatccattgattatagacatt--atatgttt-tcttcttttgtttggtttatcactatagccaaatatgatttcat 239  Q
    ||||| |||||||||||||||||  |||  ||||| || | || ||||||||| || ||||||||||||||||||||||||||    
T  29490745 caattagaatccattgattataggtatttaatatgcttctttttttttgtttgcttgatcactatagccaaatatgatttcat 29490827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 33230437 - 33230355
Alignment:
Q  160 caattggaatccattgattatagacatt--atatgttt-tcttcttttgtttggtttatcactatagccaaatatgatttcat 239  Q
    ||||| |||||||||||||||||  |||  ||||| || | || ||||||||| || ||||||||||||||||||||||||||    
T  33230437 caattagaatccattgattataggtatttaatatgcttctttttttttgtttgcttgatcactatagccaaatatgatttcat 33230355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 20765211 - 20765249
Alignment:
Q  201 ttttgtttggtttatcactatagccaaatatgatttcat 239  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  20765211 ttttgtttgcttgatcactatagccaaatatgatttcat 20765249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 34282535 - 34282497
Alignment:
Q  201 ttttgtttggtttatcactatagccaaatatgatttcat 239  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  34282535 ttttgtttgcttgatcactatagccaaatatgatttcat 34282497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 918454 - 918536
Alignment:
Q  160 caattggaatccattgattatagacatt--atatgttt-tcttcttttgtttggtttatcactatagccaaatatgatttcat 239  Q
    ||||| |||||||||||||||||  |||  ||||| || | || ||||||||| || ||||||||||||||||||||||||||    
T  918454 caattagaatccattgattataggtatttaatatgcttctttttttttgtttgcttgatcactatagccaaatatgatttcat 918536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 3710714 - 3710796
Alignment:
Q  160 caattggaatccattgattatagacatt--atatgttt-tcttcttttgtttggtttatcactatagccaaatatgatttcat 239  Q
    ||||| |||||||||||||||||  |||  ||||| || | || ||||||||| || ||||||||||||||||||||||||||    
T  3710714 caattagaatccattgattataggtatttaatatgcttctttttttttgtttgcttgatcactatagccaaatatgatttcat 3710796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 11866702 - 11866620
Alignment:
Q  160 caattggaatccattgattatagacatt--atatgttt-tcttcttttgtttggtttatcactatagccaaatatgatttcat 239  Q
    ||||| |||||||||||||||||  |||  ||||| || | || ||||||||| || ||||||||||||||||||||||||||    
T  11866702 caattagaatccattgattataggtatttaatatgcttctttttttttgtttgcttgatcactatagccaaatatgatttcat 11866620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 35358095 - 35358013
Alignment:
Q  160 caattggaatccattgattatagacatt--atatgttt-tcttcttttgtttggtttatcactatagccaaatatgatttcat 239  Q
    ||||| |||||||||||||||||  |||  ||||| || | || ||||||||| || ||||||||||||||||||||||||||    
T  35358095 caattagaatccattgattataggtatttaatatgcttctttttttttgtttgcttgatcactatagccaaatatgatttcat 35358013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University