View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19248_high_9 (Length: 225)

Name: NF19248_high_9
Description: NF19248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19248_high_9
NF19248_high_9
[»] chr4 (19 HSPs)
chr4 (75-185)||(47897039-47897149)
chr4 (1-72)||(5270382-5270453)
chr4 (1-72)||(8694779-8694850)
chr4 (1-72)||(31728325-31728396)
chr4 (1-72)||(31274580-31274651)
chr4 (1-72)||(5925763-5925834)
chr4 (1-72)||(37263522-37263593)
chr4 (4-72)||(19907357-19907425)
chr4 (16-72)||(37258824-37258880)
chr4 (1-72)||(33467962-33468033)
chr4 (7-72)||(29349166-29349231)
chr4 (1-72)||(13064772-13064843)
chr4 (1-72)||(16422112-16422182)
chr4 (1-59)||(55252711-55252769)
chr4 (11-72)||(2820867-2820928)
chr4 (7-59)||(6943834-6943886)
chr4 (29-77)||(31766953-31767001)
chr4 (1-72)||(12822869-12822940)
chr4 (2-44)||(13060534-13060576)
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-71)||(30243-30313)
[»] chr3 (16 HSPs)
chr3 (1-72)||(757323-757394)
chr3 (1-72)||(18468278-18468349)
chr3 (1-72)||(18473072-18473143)
chr3 (5-72)||(14437652-14437719)
chr3 (1-72)||(23660448-23660519)
chr3 (1-72)||(23665080-23665151)
chr3 (1-69)||(32473106-32473174)
chr3 (1-72)||(7570174-7570245)
chr3 (1-72)||(20521027-20521098)
chr3 (1-58)||(55326843-55326899)
chr3 (1-72)||(12970767-12970838)
chr3 (7-72)||(27710001-27710065)
chr3 (1-72)||(20175456-20175527)
chr3 (1-56)||(12964857-12964913)
chr3 (1-44)||(46965078-46965121)
chr3 (1-41)||(55432291-55432330)
[»] chr2 (17 HSPs)
chr2 (1-72)||(18345482-18345553)
chr2 (1-87)||(1933953-1934039)
chr2 (1-72)||(17967923-17967994)
chr2 (1-72)||(30651980-30652051)
chr2 (2-72)||(19891466-19891536)
chr2 (1-72)||(9179685-9179756)
chr2 (1-72)||(9184376-9184447)
chr2 (1-72)||(17974310-17974381)
chr2 (1-75)||(20101606-20101680)
chr2 (1-59)||(29678744-29678802)
chr2 (1-59)||(12797996-12798054)
chr2 (15-72)||(40846480-40846537)
chr2 (1-72)||(24536975-24537046)
chr2 (1-75)||(19897014-19897088)
chr2 (2-59)||(25496356-25496413)
chr2 (1-44)||(12361311-12361354)
chr2 (4-41)||(28604154-28604191)
[»] chr1 (6 HSPs)
chr1 (1-72)||(10136391-10136462)
chr1 (1-72)||(25844822-25844893)
chr1 (1-72)||(26926688-26926759)
chr1 (2-72)||(8138659-8138726)
chr1 (1-59)||(5100147-5100204)
chr1 (26-72)||(39199735-39199781)
[»] chr5 (18 HSPs)
chr5 (1-72)||(6154391-6154462)
chr5 (1-72)||(7452821-7452892)
chr5 (1-72)||(26668344-26668415)
chr5 (1-72)||(26939941-26940012)
chr5 (1-72)||(29166932-29167003)
chr5 (1-72)||(37247758-37247829)
chr5 (1-72)||(36424704-36424775)
chr5 (1-72)||(39519451-39519522)
chr5 (1-72)||(37646014-37646085)
chr5 (1-72)||(39524090-39524161)
chr5 (1-72)||(36430584-36430653)
chr5 (1-72)||(12104111-12104182)
chr5 (1-72)||(20180114-20180185)
chr5 (1-72)||(37536896-37536967)
chr5 (1-59)||(23757136-23757194)
chr5 (1-59)||(23822592-23822650)
chr5 (1-72)||(10759321-10759391)
chr5 (1-44)||(40150261-40150304)
[»] chr6 (16 HSPs)
chr6 (1-69)||(17963520-17963588)
chr6 (1-72)||(16835120-16835191)
chr6 (1-69)||(22694347-22694415)
chr6 (1-75)||(11429023-11429097)
chr6 (1-57)||(12405334-12405390)
chr6 (4-55)||(6406836-6406887)
chr6 (1-72)||(19994344-19994415)
chr6 (1-55)||(17600443-17600497)
chr6 (3-76)||(5857028-5857100)
chr6 (1-77)||(11533656-11533732)
chr6 (1-77)||(11559166-11559242)
chr6 (2-46)||(29891947-29891991)
chr6 (1-44)||(11569679-11569722)
chr6 (2-69)||(33686606-33686673)
chr6 (1-58)||(2699087-2699144)
chr6 (1-45)||(20747283-20747327)
[»] chr8 (13 HSPs)
chr8 (1-72)||(40124853-40124924)
chr8 (20-72)||(33417596-33417648)
chr8 (16-71)||(15950528-15950583)
chr8 (1-59)||(18875357-18875415)
chr8 (1-72)||(1808516-1808587)
chr8 (1-59)||(2966651-2966709)
chr8 (1-58)||(1909920-1909977)
chr8 (2-77)||(44924875-44924950)
chr8 (11-72)||(17027162-17027223)
chr8 (11-72)||(17557654-17557715)
chr8 (14-75)||(26780182-26780244)
chr8 (1-55)||(38181258-38181312)
chr8 (1-56)||(28564273-28564327)
[»] chr7 (10 HSPs)
chr7 (1-72)||(4931289-4931360)
chr7 (3-72)||(21672272-21672341)
chr7 (2-66)||(44508261-44508325)
chr7 (2-58)||(3881038-3881094)
chr7 (1-70)||(2595836-2595905)
chr7 (7-68)||(3046645-3046706)
chr7 (1-72)||(12802348-12802419)
chr7 (1-44)||(42625565-42625608)
chr7 (14-72)||(26342284-26342342)
chr7 (4-72)||(10392046-10392114)
[»] scaffold0352 (1 HSPs)
scaffold0352 (1-72)||(8175-8246)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-72)||(5130-5201)
scaffold0002 (1-59)||(442912-442970)
[»] scaffold0240 (1 HSPs)
scaffold0240 (1-72)||(5035-5106)
[»] scaffold0057 (1 HSPs)
scaffold0057 (1-44)||(36187-36230)


Alignment Details
Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 75 - 185
Target Start/End: Original strand, 47897039 - 47897149
Alignment:
Q  75 gatcaagtgcaagcggaaatacagttttaaaaaacagtgctattttgtctcactcaaacaatgtatgtgttttcgcatgataacaatctgtcaccaacta 174  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47897039 gatcaagtgcaagcggaaatacagtttaaaacaacagtgctattttgtctcactcaatcaatgtatgtgttttcgcatgataacaatctgtcaccaacta 47897138  T
Q  175 acagttgacaa 185  Q
    |||||||||||    
T  47897139 acagttgacaa 47897149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 5270453 - 5270382
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  5270453 cattagatcaaagtataattacttggtgtttaatcttccaatttttcatccaacatcacatcaatgttccaa 5270382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 8694779 - 8694850
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  8694779 cattagatcaaagtataattacttggtgtttaatcttccaatttttcatccaacatcacatcaatgttccaa 8694850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 31728396 - 31728325
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  31728396 cattagatcaaattataattacttggtgtttaatcttccaatttttcatccaacatcacatcaatgttccaa 31728325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 31274580 - 31274651
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  31274580 cattagatcaaagtataattacttggtgtttaatctttcaatttttcatccaacatcacatcaatgttccaa 31274651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 5925834 - 5925763
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    ||||| |||||| ||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||    
T  5925834 cattatatcaaagtataattacttggtatttaatcttccaatttttcatccaacatcacatcaatgttccaa 5925763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 37263593 - 37263522
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| ||||||||||| |||||||||||| |||||||||||| |||||||| ||||||||||||    
T  37263593 cattagatcaaagtataattacttggtgtttaatctttcaatttttcatcaaacatcacatcaatgttccaa 37263522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 19907357 - 19907425
Alignment:
Q  4 tagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    ||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||  |||||||||||    
T  19907357 tagatcaaaatataattacttggtgtttaatctttcaatttttcttccaacatcacaccaatgttccaa 19907425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 37258880 - 37258824
Alignment:
Q  16 taattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    ||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  37258880 taattacttggtgtttaatctttcaatttttcatccaacatcacatcaatgttccaa 37258824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 33468033 - 33467962
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| ||||||||||| |||||||||||| ||||||||| |||||||||||   ||||||||||    
T  33468033 cattagatcaaagtataattacttggtgtttaatctttcaatttttcttccaacatcacactaatgttccaa 33467962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 29349231 - 29349166
Alignment:
Q  7 atcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||| ||||||||||||||||||||||||||| |||| | |||||||||||  |||||||||||    
T  29349231 atcaaagtataattacttagtgtttaatcttccagttttccttccaacatcacaccaatgttccaa 29349166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 13064843 - 13064772
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| ||||||||||| || |||| | |||||||||||| |||||||||||  |||||||||||    
T  13064843 cattagatcaaagtataattacttggtatttatttttccaatttttcttccaacatcacaccaatgttccaa 13064772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 16422112 - 16422182
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| ||||||||||| ||||||||||||||||||| |  |||||||||||  |||||||||||    
T  16422112 cattagatcaaagtataattacttggtgtttaatcttccaatttattttccaacatcac-acaatgttccaa 16422182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 55252711 - 55252769
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcac 59  Q
    ||||| |||||| |||||||||||  |||||| ||||||||||||||||||||||||||    
T  55252711 cattaaatcaaagtataattacttgatgtttagtcttccaatttttcatccaacatcac 55252769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 2820867 - 2820928
Alignment:
Q  11 aaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||||| |||||||||||||||||||| | |||||| ||||  |||||||||||    
T  2820867 aaatataattacttggtgtttaatcttccaattttccttccaacttcacaccaatgttccaa 2820928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 6943834 - 6943886
Alignment:
Q  7 atcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcac 59  Q
    |||||| |||||||||||  ||||||||||||||||||||| |||||||||||    
T  6943834 atcaaagtataattacttgatgtttaatcttccaatttttcttccaacatcac 6943886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 31766953 - 31767001
Alignment:
Q  29 tttaatcttccaatttttcatccaacatcacgtcaatgttccaatagat 77  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| ||||    
T  31766953 tttaatctttcaatttttcatccaacatcacatcaatgttccaacagat 31767001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 12822940 - 12822869
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| |||||||| || |||||| |||||||||||| |  |||||||||||   ||||||||||    
T  12822940 cattagatcaaagtataattatttggtgtttgatcttccaatttattttccaacatcacactaatgttccaa 12822869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 13060534 - 13060576
Alignment:
Q  2 attagatcaaaatataattacttagtgtttaatcttccaattt 44  Q
    ||||||||||| ||||||||||| | |||||||||||||||||    
T  13060534 attagatcaaagtataattacttggggtttaatcttccaattt 13060576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 30243 - 30313
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttcca 71  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  30243 cattagatcaaaatataattacttggtgtttaatcttccaatttttcatccaacatcacatcaatgttcca 30313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 9e-26; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 757394 - 757323
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  757394 cattagatcaaagtataattacttggtgtttaatcttccaatttttcatccaacatcacatcaatgttccaa 757323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 18468278 - 18468349
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  18468278 cattagatcaaactataattacttggtgtttaatcttccaatttttcatccaacatcacatcaatgttccaa 18468349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 18473072 - 18473143
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  18473072 cattagatcaaagtataattactttgtgtttaatcttccaatttttcatccaacatcacatcaatgttccaa 18473143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 14437719 - 14437652
Alignment:
Q  5 agatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  14437719 agatcaaagtataattacttggtgtttaatcttccaatttttcatccaacatcacatcaatgttccaa 14437652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 23660519 - 23660448
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  23660519 cattagatcaaagtataattacttggtgtttaatctttcaatttttcatccaacatcacatcaatgttccaa 23660448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 23665151 - 23665080
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  23665151 cattagatcaaagtataattacttggtgtttaatctttcaatttttcatccaacatcacatcaatgttccaa 23665080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 32473174 - 32473106
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttc 69  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||    
T  32473174 cattagatcaaagtataattacttggtgtttaatcttccaatttttcatccaatatcacatcaatgttc 32473106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 7570245 - 7570174
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| | ||||||||||    
T  7570245 cattagatcaaagtataattacttggtgtttaatctttcaatttttcatccaacatcacattaatgttccaa 7570174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 20521027 - 20521098
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||   ||||||||||    
T  20521027 cattagatcaaagtataattacttggtgtttaatcttccaatttttcttccaacatcacactaatgttccaa 20521098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 55326843 - 55326899
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatca 58  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  55326843 cattagatcaaa-tataattacttggtgtttaatcttccaatttttcatccaacatca 55326899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 12970838 - 12970767
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    ||||| |||||  ||||||||||| |||||||||||||| ||||||||||||||||||  ||||||||||||    
T  12970838 cattaaatcaacgtataattacttggtgtttaatcttccgatttttcatccaacatcatatcaatgttccaa 12970767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 27710001 - 27710065
Alignment:
Q  7 atcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||| |||||| |||| |||||||||||||||||||||||| ||||||||| ||||||||||||    
T  27710001 atcaaagtataat-acttggtgtttaatcttccaatttttcattcaacatcacatcaatgttccaa 27710065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 20175456 - 20175527
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| ||||||||||| |||||||||||| |||||| |  |||||||||||   ||||||||||    
T  20175456 cattagatcaaagtataattacttggtgtttaatctttcaatttattttccaacatcacactaatgttccaa 20175527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 12964913 - 12964857
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatc-ttccaatttttcatccaacat 56  Q
    ||||| |||||| ||||||||||| |||||||||| ||| |||||||||||||||||    
T  12964913 cattaaatcaaagtataattacttggtgtttaatcattctaatttttcatccaacat 12964857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 46965078 - 46965121
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaattt 44  Q
    |||||||||||| |||||||| || |||||||||||||||||||    
T  46965078 cattagatcaaagtataattatttggtgtttaatcttccaattt 46965121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 55432291 - 55432330
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaa 41  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  55432291 cattagatcaaa-tataattacttggtgtttaatcttccaa 55432330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 18345482 - 18345553
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  18345482 cattagatcaaagtataattacttggtgtttaatcttccaatttttcatccaacatcacatcaatgttccaa 18345553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 1934039 - 1933953
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaatagatcaagtgcaag 87  Q
    |||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||| ||||| | ||||||    
T  1934039 cattagatcaaagtataattacttggtgtttaatctttcaatttttcatccaacatcacatcaatgttccaacagatccattgcaag 1933953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 17967994 - 17967923
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||    
T  17967994 cattagatcaaagtataattacttgatgtttaatcttccaatttttcatccaacatcacatcaatgttccaa 17967923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 30651980 - 30652051
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  30651980 cattagatcaaagtataattacttggtgtttaatctttcaatttttcatccaacatcacatcaatgttccaa 30652051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 19891536 - 19891466
Alignment:
Q  2 attagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    ||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||    
T  19891536 attagatcaaagtataattacatggtgtttaatcttccaatttttcatccaacatcacatcaatgttccaa 19891466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 9179756 - 9179685
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||| ||||| ||||||    
T  9179756 cattagatcaaagtataattacttggtgtttaatcttccaatttttcatccaccatcacatcaatattccaa 9179685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 9184447 - 9184376
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| | |||||| || |||||||||||||||||||||||||||||||||| ||||||||||||    
T  9184447 cattagatcaaagtttaattatttggtgtttaatcttccaatttttcatccaacatcacatcaatgttccaa 9184376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 17974381 - 17974310
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| |||||||| ||  ||||||||||||||||||||||||||||||||| ||||||||||||    
T  17974381 cattagatcaaagtataattatttgatgtttaatcttccaatttttcatccaacatcacatcaatgttccaa 17974310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 20101680 - 20101606
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaatag 75  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||  |||| |||||||||    
T  20101680 cattagatcaaagtataattacttggtgtttaatcttccaatttttcttccaacatcacaccaattttccaatag 20101606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 29678744 - 29678802
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcac 59  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||    
T  29678744 cattagatcaaaatataattccttagtatttaatcttccaatttttcttccaacatcac 29678802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 12797996 - 12798054
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcac 59  Q
    |||||||||||| |||||||| || |||||||||||||||||||||| |||||||||||    
T  12797996 cattagatcaaagtataattatttggtgtttaatcttccaatttttcttccaacatcac 12798054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 40846537 - 40846480
Alignment:
Q  15 ataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    ||||||| || |||||||||||||||||||||| |||||||||||  |||||||||||    
T  40846537 ataattatttggtgtttaatcttccaatttttcttccaacatcacaccaatgttccaa 40846480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 24537046 - 24536975
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    ||||||||||||  || |||| || |||||||||||||||||||||| |||||||| ||  |||||||||||    
T  24537046 cattagatcaaagaatgattaattggtgtttaatcttccaatttttcttccaacataacaccaatgttccaa 24536975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 19897014 - 19897088
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaatag 75  Q
    ||||| ||||||||||||||||||  | |||||||||||| ||| || ||||||||||   ||||||||||||||    
T  19897014 cattatatcaaaatataattacttgatatttaatcttccattttctcttccaacatcataccaatgttccaatag 19897088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 25496413 - 25496356
Alignment:
Q  2 attagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcac 59  Q
    ||||||||||| |||||||| || ||||||||||||||||||| |  |||||||||||    
T  25496413 attagatcaaagtataattatttggtgtttaatcttccaatttattttccaacatcac 25496356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 12361311 - 12361354
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaattt 44  Q
    |||||||||||| |||||||| || |||||||||||||||||||    
T  12361311 cattagatcaaagtataattatttggtgtttaatcttccaattt 12361354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 28604154 - 28604191
Alignment:
Q  4 tagatcaaaatataattacttagtgtttaatcttccaa 41  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  28604154 tagatcaaaatttaattacttggtgtttaatcttccaa 28604191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 10136391 - 10136462
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  10136391 cattagatcaaagtataattacttggtgtttaatcttccaatttttcatccaacatcacatcaatgttccaa 10136462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 25844822 - 25844893
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  25844822 cattagatcaaagtataattacttggtgtttaatctttcaatttttcatccaacatcacatcaatgttccaa 25844893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 26926759 - 26926688
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    ||||| |||||| |||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||    
T  26926759 cattaaatcaaagtataattagttggtgtttaatcttccaatttttcatccaacatcacatcaatgttccaa 26926688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 8138659 - 8138726
Alignment:
Q  2 attagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||| |||||| ||||||||||||   ||||||||||||||||||| ||||| ||||| ||||||||||||    
T  8138659 attatatcaaagtataattactta---tttaatcttccaatttttcttccaagatcacatcaatgttccaa 8138726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 5100204 - 5100147
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcac 59  Q
    |||||||| ||| ||||||||||| ||||||||||||||||||| |  |||||||||||    
T  5100204 cattagattaaagtataattactt-gtgtttaatcttccaatttattttccaacatcac 5100147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 39199781 - 39199735
Alignment:
Q  26 gtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||||||||||||| ||| |||||||  |||||||||||    
T  39199781 gtgtttaatcttccaatttttcttcccacatcacaccaatgttccaa 39199735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 6154462 - 6154391
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    ||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||| ||||||||||||    
T  6154462 cattagatcaaaatataattacttgatgtttaattttccaatttttcatccaacatcacatcaatgttccaa 6154391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 7452821 - 7452892
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  7452821 cattagatcagagtataattactttgtgtttaatcttccaatttttcatccaacatcacatcaatgttccaa 7452892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 26668344 - 26668415
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| |||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||    
T  26668344 cattagatcaaagtataattatttggtgtttaatcttccaatttttcatccaacatcacatcaatgttccaa 26668415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 26939941 - 26940012
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| |||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||    
T  26939941 cattagatcaaagtataattatttggtgtttaatcttccaatttttcatccaacatcacatcaatgttccaa 26940012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 29167003 - 29166932
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    ||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  29167003 cattaaatcaaagtataattacttggtgtttaatcttccaatttttcatccaacatcacatcaatgttccaa 29166932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 37247829 - 37247758
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  37247829 cattagatcaaagtataattacttggtgtttaatctttcaatttttcatccaacatcacatcaatgttccaa 37247758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 36424704 - 36424775
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||| | ||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||    
T  36424704 cattagatcatagtataattacttggtgtttaatcttccaattttttatccaacatcacatcaatgttccaa 36424775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 39519451 - 39519522
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| |||| |||||| |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  39519451 cattagatcaaagtatatttacttggtgtttaatctttcaatttttcatccaacatcacatcaatgttccaa 39519522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 37646085 - 37646014
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| |||||||||||  |||||||||||||||||||||||| | |||||| ||||||||||||    
T  37646085 cattagatcaaagtataattacttgatgtttaatcttccaatttttcatcaagcatcacatcaatgttccaa 37646014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 39524090 - 39524161
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| |||| ||| || |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  39524090 cattagatcaaagtatatttatttggtgtttaatctttcaatttttcatccaacatcacatcaatgttccaa 39524161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 36430584 - 36430653
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||| |||||||||||||    | ||||||||||||||||||||||||||||||| ||||||||||||    
T  36430584 cattagattaaaatataattacga--tatttaatcttccaatttttcatccaacatcacatcaatgttccaa 36430653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 12104111 - 12104182
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| ||||||||||| |||||| |||||| |||||||| |||||||||||   ||||||||||    
T  12104111 cattagatcaaagtataattacttggtgtttcatcttctaatttttcttccaacatcacactaatgttccaa 12104182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 20180185 - 20180114
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||| ||| ||||||||||| ||||||||||||||||||||||  ||| ||||||  |||||||||||    
T  20180185 cattagattaaagtataattacttggtgtttaatcttccaatttttctaccagcatcacaccaatgttccaa 20180114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 37536967 - 37536896
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    ||||| |||||| |||||||||||  |||||||||||| ||||||||||| | |||||| ||||||||||||    
T  37536967 cattatatcaaagtataattacttgatgtttaatcttctaatttttcatcaagcatcacatcaatgttccaa 37536896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 23757194 - 23757136
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcac 59  Q
    ||||| ||| || ||||||||||| |||||||||||||||||||||| |||||||||||    
T  23757194 cattaaatctaagtataattacttggtgtttaatcttccaatttttcttccaacatcac 23757136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 23822650 - 23822592
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcac 59  Q
    ||||| ||| || ||||||||||| |||||||||||||||||||||| |||||||||||    
T  23822650 cattaaatctaagtataattacttggtgtttaatcttccaatttttcttccaacatcac 23822592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 10759391 - 10759321
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    ||||| |||||||||||||||||| ||||||||||||||||||| |  |||||||||||   ||||||||||    
T  10759391 cattaaatcaaaatataattactt-gtgtttaatcttccaatttattttccaacatcacactaatgttccaa 10759321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 40150261 - 40150304
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaattt 44  Q
    |||||||||||| ||||||||||| |||||||||||||||||||    
T  40150261 cattagatcaaagtataattacttggtgtttaatcttccaattt 40150304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 17963588 - 17963520
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttc 69  Q
    |||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  17963588 cattagatcaaagtatagttacttggtgtttaatcttccaatttttcatccaacatcacatcaatgttc 17963520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 16835191 - 16835120
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| |||| |||||| |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  16835191 cattagatcaaagtatatttacttggtgtttaatctttcaatttttcatccaacatcacatcaatgttccaa 16835120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 22694415 - 22694347
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttc 69  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||  ||||||||    
T  22694415 cattagatcaaagtataattacttggtgtttaatcttccaatttttcttccaacatcacaccaatgttc 22694347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 11429023 - 11429097
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaatag 75  Q
    |||||||||||| ||||||||  | |||||||||||||||||||||||||||| |  || |||||||||||||||    
T  11429023 cattagatcaaagtataattatctggtgtttaatcttccaatttttcatccaaaagtacatcaatgttccaatag 11429097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 12405390 - 12405334
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatc 57  Q
    ||||||||||||||||||||| ||  ||||||||||||||||||||| |||||||||    
T  12405390 cattagatcaaaatataattagttgatgtttaatcttccaatttttcttccaacatc 12405334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 6406887 - 6406836
Alignment:
Q  4 tagatcaaaatataattacttagtgtttaatcttccaatttttcatccaaca 55  Q
    ||||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  6406887 tagatcaaagtataattacttggtgtttaatctttcaatttttcatccaaca 6406836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 19994415 - 19994344
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||| ||| ||| ||||||||| |||||||||||||||||||||||| |||||||||||  ||||| |||||    
T  19994415 cattcgattaaagtataattacctagtgtttaatcttccaatttttcttccaacatcacaccaatgatccaa 19994344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 17600443 - 17600497
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaaca 55  Q
    |||||||||||| ||| ||||||| |||||||||||||||||||||| |||||||    
T  17600443 cattagatcaaagtatgattacttggtgtttaatcttccaatttttcttccaaca 17600497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 5857028 - 5857100
Alignment:
Q  3 ttagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaataga 76  Q
    |||| ||||| |||||||| || |||||||||||||||||||||| |||||||||||   ||||||||||||||    
T  5857028 ttaggtcaaagtataatta-ttggtgtttaatcttccaatttttcttccaacatcacactaatgttccaataga 5857100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 11533732 - 11533656
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaatagat 77  Q
    |||||||||||| ||||||||||| ||||||||||||| ||||| |  |||||||||||   |||||||||| ||||    
T  11533732 cattagatcaaactataattacttggtgtttaatcttctaatttattctccaacatcacactaatgttccaacagat 11533656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 11559242 - 11559166
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaatagat 77  Q
    |||||||||||| ||||||||||| ||||||||||||| ||||| |  |||||||||||   |||||||||| ||||    
T  11559242 cattagatcaaactataattacttggtgtttaatcttctaatttattctccaacatcacactaatgttccaacagat 11559166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 29891991 - 29891947
Alignment:
Q  2 attagatcaaaatataattacttagtgtttaatcttccaattttt 46  Q
    ||||||||||| || |||||||| |||||||||||||||||||||    
T  29891991 attagatcaaagtacaattactttgtgtttaatcttccaattttt 29891947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 11569722 - 11569679
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaattt 44  Q
    |||||||||||| ||||||||||| ||||||||||||| |||||    
T  11569722 cattagatcaaagtataattacttggtgtttaatcttctaattt 11569679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 33686673 - 33686606
Alignment:
Q  2 attagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttc 69  Q
    ||||||||||| |||||||| ||  |||||||||||||||||| |  ||||||||||| | |||||||    
T  33686673 attagatcaaagtataattatttgatgtttaatcttccaatttattttccaacatcacattaatgttc 33686606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 2699144 - 2699087
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatca 58  Q
    |||||||| ||| |||||||||||  |||||||||||||||||| |  ||||||||||    
T  2699144 cattagattaaagtataattacttgatgtttaatcttccaatttattttccaacatca 2699087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 20747327 - 20747283
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttt 45  Q
    ||||| |||||| |||||||||||  |||||||||||||||||||    
T  20747327 cattaaatcaaagtataattacttgatgtttaatcttccaatttt 20747283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 40124924 - 40124853
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| |||| |||||| |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  40124924 cattagatcaaagtatatttacttggtgtttaatctttcaatttttcatccaacatcacatcaatgttccaa 40124853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 33417596 - 33417648
Alignment:
Q  20 tacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  33417596 tacttggtgtttaatcttccaatttttcatccaacatcacatcaatgttccaa 33417648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 15950583 - 15950528
Alignment:
Q  16 taattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttcca 71  Q
    ||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||    
T  15950583 taattacttggtgtttagtcttccaatttttcatccaacatcacatcaatgttcca 15950528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 18875415 - 18875357
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcac 59  Q
    |||||||||||||| |||||||| ||| ||||||||||||||||||| |||||||||||    
T  18875415 cattagatcaaaatttaattactcagtatttaatcttccaatttttcttccaacatcac 18875357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 1808516 - 1808587
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| ||||||||||| ||||||||||||||||||| |  |||||||||||   ||||||||||    
T  1808516 cattagatcaaagtataattacttggtgtttaatcttccaatttattttccaacatcacactaatgttccaa 1808587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 2966651 - 2966709
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcac 59  Q
    |||||||| |||||||||||| ||  ||||||||||||||||||||| |||||||||||    
T  2966651 cattagataaaaatataattatttgatgtttaatcttccaatttttcttccaacatcac 2966709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 1909977 - 1909920
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatca 58  Q
    |||||||||||| ||||||||||| ||||||||||||||||||| |  ||||||||||    
T  1909977 cattagatcaaagtataattacttggtgtttaatcttccaatttattttccaacatca 1909920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 44924950 - 44924875
Alignment:
Q  2 attagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaatagat 77  Q
    ||||||||||| |||||||  |||||||||||||||||||||| |  |||||||||||   |||||||||| ||||    
T  44924950 attagatcaaagtataattgattagtgtttaatcttccaatttattttccaacatcacactaatgttccaacagat 44924875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 17027162 - 17027223
Alignment:
Q  11 aaatataattacttagtgtttaatcttccaatttt-tcatccaacatcacgtcaatgttccaa 72  Q
    ||||||||||| || |||||||||||||||||||| |||||||||||||| | ||||||||||    
T  17027162 aaatataatta-ttggtgtttaatcttccaattttttcatccaacatcacattaatgttccaa 17027223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 17557654 - 17557715
Alignment:
Q  11 aaatataattacttagtgtttaatcttccaatttt-tcatccaacatcacgtcaatgttccaa 72  Q
    ||||||||||| || |||||||||||||||||||| |||||||||||||| | ||||||||||    
T  17557654 aaatataatta-ttggtgtttaatcttccaattttttcatccaacatcacattaatgttccaa 17557715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 26780182 - 26780244
Alignment:
Q  14 tataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaat-gttccaatag 75  Q
    ||||||||||||||||||||||||  |||||||| |||||||| || ||||| ||||||||||    
T  26780182 tataattacttagtgtttaatcttttaatttttcttccaacattacatcaatggttccaatag 26780244  T

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Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 38181312 - 38181258
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaaca 55  Q
    |||||||||||| |||||||||||  |||||||| |||||||||||| |||||||    
T  38181312 cattagatcaaagtataattacttgatgtttaatgttccaatttttcttccaaca 38181258  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 28564327 - 28564273
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacat 56  Q
    |||||||||||| |||||| | || |||||||||||||||||||||| ||||||||    
T  28564327 cattagatcaaagtataat-atttggtgtttaatcttccaatttttcttccaacat 28564273  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 4931289 - 4931360
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    ||||| |||||| ||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  4931289 cattatatcaaagtataattacttggtgtttaatctttcaatttttcatccaacatcacatcaatgttccaa 4931360  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 21672272 - 21672341
Alignment:
Q  3 ttagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||| ||||||||||| ||||||| |||||||||||||| |||||||||||  |||||||||||    
T  21672272 ttagatcaaagtataattacttggtgtttattcttccaatttttcttccaacatcacaccaatgttccaa 21672341  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 44508325 - 44508261
Alignment:
Q  2 attagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatg 66  Q
    ||||||||||| |||||||||||  | ||||||||||||||||||||||||||||||| ||||||    
T  44508325 attagatcaaagtataattacttgatatttaatcttccaatttttcatccaacatcacatcaatg 44508261  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 3881038 - 3881094
Alignment:
Q  2 attagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatca 58  Q
    ||||||||||| ||||||||||| || ||||||||||||||||||| ||||||||||    
T  3881038 attagatcaaagtataattacttggtatttaatcttccaatttttcttccaacatca 3881094  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 2595836 - 2595905
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttcc 70  Q
    |||||||| ||| | |||||| || |||||||||||||||||||||| |||||||| || ||||||||||    
T  2595836 cattagattaaagtgtaattatttggtgtttaatcttccaatttttcttccaacattacatcaatgttcc 2595905  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 3046645 - 3046706
Alignment:
Q  7 atcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgtt 68  Q
    |||||| ||||||||||| |||||||||||| ||||||||| |||||||||||  |||||||    
T  3046645 atcaaattataattacttggtgtttaatctttcaatttttcttccaacatcacaccaatgtt 3046706  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 12802348 - 12802419
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||| ||| ||||||||||| ||||||||||||||||||| |  |||||||||||   ||||||||||    
T  12802348 cattagattaaagtataattacttggtgtttaatcttccaatttattttccaacatcacactaatgttccaa 12802419  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 42625608 - 42625565
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaattt 44  Q
    |||||||||||| ||||||||||| |||||||||||||||||||    
T  42625608 cattagatcaaagtataattacttggtgtttaatcttccaattt 42625565  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 26342284 - 26342342
Alignment:
Q  14 tataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||  | |||||||||| |||||||||||||||||||| | ||||||||||    
T  26342284 tataattacttgatatttaatcttcgaatttttcatccaacatcacattaatgttccaa 26342342  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 10392114 - 10392046
Alignment:
Q  4 tagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    ||||||||| ||||||||||| |||||||||||| | ||||| |  ||||| ||||  |||||||||||    
T  10392114 tagatcaaagtataattacttggtgtttaatctttcgattttcctcccaacttcacaccaatgttccaa 10392046  T

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Target: scaffold0352 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 8175 - 8246
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    ||||| |||||| ||||||||||| ||||||||||||||||||| |||||||||||| | ||||||||||||    
T  8175 cattaaatcaaagtataattacttggtgtttaatcttccaatttatcatccaacatcgcatcaatgttccaa 8246  T

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Target: scaffold0002 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 5130 - 5201
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| |||| | |||| |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  5130 cattagatcaaagtatattaacttggtgtttaatctttcaatttttcatccaacatcacatcaatgttccaa 5201  T

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Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 442970 - 442912
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcac 59  Q
    |||||||||||| |||||||| ||| |||||||||||||||||| |  |||||||||||    
T  442970 cattagatcaaagtataattatttaatgtttaatcttccaatttattttccaacatcac 442912  T

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Target: scaffold0240 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 5035 - 5106
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaatttttcatccaacatcacgtcaatgttccaa 72  Q
    |||||||||||| ||||||||| | |||||||||||| ||||||||| |||||||||||  ||||| |||||    
T  5035 cattagatcaaagtataattacgtggtgtttaatctttcaatttttcttccaacatcacaccaatgatccaa 5106  T

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Target: scaffold0057 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 36187 - 36230
Alignment:
Q  1 cattagatcaaaatataattacttagtgtttaatcttccaattt 44  Q
    ||||||||||||||||||||| || |||||||||||| ||||||    
T  36187 cattagatcaaaatataattatttggtgtttaatctttcaattt 36230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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