View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19248_low_1 (Length: 770)

Name: NF19248_low_1
Description: NF19248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19248_low_1
NF19248_low_1
[»] chr5 (7 HSPs)
chr5 (12-752)||(5663107-5663855)
chr5 (39-235)||(5664702-5664895)
chr5 (12-87)||(5046440-5046515)
chr5 (12-87)||(5047211-5047286)
chr5 (12-87)||(5047982-5048057)
chr5 (134-187)||(5046572-5046625)
chr5 (134-187)||(5047343-5047396)
[»] chr4 (7 HSPs)
chr4 (12-235)||(24853338-24853562)
chr4 (134-229)||(24856353-24856448)
chr4 (12-87)||(28787952-28788027)
chr4 (12-87)||(51246614-51246689)
chr4 (12-87)||(17525522-17525597)
chr4 (30-230)||(28787018-28787223)
chr4 (134-184)||(51246738-51246788)
[»] scaffold0406 (1 HSPs)
scaffold0406 (12-198)||(6272-6460)
[»] chr7 (1 HSPs)
chr7 (12-87)||(22622406-22622481)
[»] chr1 (3 HSPs)
chr1 (39-78)||(29371922-29371961)
chr1 (133-237)||(22056427-22056530)
chr1 (12-65)||(22055518-22055571)
[»] chr3 (2 HSPs)
chr3 (12-87)||(12739334-12739409)
chr3 (30-87)||(12738201-12738258)
[»] chr8 (1 HSPs)
chr8 (28-98)||(1275221-1275291)


Alignment Details
Target: chr5 (Bit Score: 665; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 12 - 752
Target Start/End: Complemental strand, 5663855 - 5663107
Alignment:
Q  12 caaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatttaaacatttaaatacaattacaat 111  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5663855 caaaggcctagactcttctagttttagaaacatcttcaatcacttataaatagaattatatgggtgcgattgtatttaaacatttaaatacaattacaat 5663756  T
Q  112 atattaagggcttccatatactatattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaatgctattaaccattgtaccactagc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  5663755 atattaagggcttccatatactatattctctccttctacaatgagctatttatcaatgtgtgtcttcttgtccaatgctactaaccattgtaccactagc 5663656  T
Q  212 tcccacaatatatattttctaacaatatactcataagttatgaagggtgccactcctatgatgaatcatcttaagacaagcaatggttgtgaattagaac 311  Q
     ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5663655 acccacaatatatattttctaacaatatactcgtaagttatgaagggtgccactcctatgatgaatcatcttaagacaagcaatg-ttgtgaattagaac 5663557  T
Q  312 tagttagtggtgtctcaactctgatgcaattgtaacctgatgcaattgattctgtggacttttatgatgac---------taaccaatcacattccataa 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||    
T  5663556 tagttagtggtgtctcaactctgatgcaattgtaacctgatgcaattgattctgtggacttttatgatgacaattttaattaaccaatcacattccataa 5663457  T
Q  403 gttccttcctagctgatttactttcttccatatttatgattgatatcttctgaacttgtacaaacgatgaagttcgtatacctataannnnnnngtcaga 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  5663456 gttccttcctagctgatttactttcttccatatttatgattgatatcttctgaacttgtacaaacgatgaagttcgtatacctataatttttttgtcaga 5663357  T
Q  503 atacttagataatacaattaaattgtagtctgcaaatgcaattgcggctgcaatataaaattcctagagatatctgcagtggtaatttcaaccgcatctt 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5663356 atacttagataatacaattaaattgtagtctgcaaatgcaattgcggctgcaatataaaattcctagaggtatctgcagtggtaatttcaaccgcatctt 5663257  T
Q  603 cttcatgtttttgcatggccatcctcgtgtactctttttcacatagcctaataggcttctccatggagatctgttttaccttctatgataaagttaaact 702  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5663256 cttcatgtttttgcatggccatcctcgtgtactctttttcacatagcctaataggcttctccatggagatctgttttaccttctatgataaagttaaact 5663157  T
Q  703 cctttgttggaaatttgtattcaatctatctctatggtatcactcacccc 752  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5663156 cctttgttggaaatttgtattcaatctatctctatggtatcactcacccc 5663107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 39 - 235
Target Start/End: Complemental strand, 5664895 - 5664702
Alignment:
Q  39 aaacatcttcaagcacttataaatagaattatatgggtgcgattgtatttaaacatttaaatacaattacaata-tattaagggcttccatatactatat 137  Q
    |||||||||||||||| ||||    || |||||||||||| |||||||| || | |||||||||||| |||||| |||| ||||||||| | ||  ||||    
T  5664895 aaacatcttcaagcacctata----gacttatatgggtgcaattgtattcaagcttttaaatacaatgacaataatattgagggcttccctgtatcatat 5664800  T
Q  138 tctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaatgctattaaccattgtaccactagctcccacaatatatattttctaaca 235  Q
    |||||||| ||||||| |  || ||||||||||||| ||||||||||||||| |   |||| | ||| ||| ||| ||||| ||||||||||||||||    
T  5664799 tctctcctcctacaataaattaattaccaatgtgtgccttcttgtccaatgccacataccactctacaacttgcttccacactatatattttctaaca 5664702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 5046440 - 5046515
Alignment:
Q  12 caaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 87  Q
    |||||||||||| | |||||||||||||||||||| ||||||| |||||||||| ||||||| |||| ||||||||    
T  5046440 caaaggcctagattattctagttttagaaacatctacaagcacctataaatagacttatatgagtgcaattgtatt 5046515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 5047211 - 5047286
Alignment:
Q  12 caaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 87  Q
    |||||||||||| | |||||||||||||||||||| ||||||| |||||||| | ||||||| |||| ||||||||    
T  5047211 caaaggcctagattattctagttttagaaacatctacaagcacctataaatatacttatatgagtgcaattgtatt 5047286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 5047982 - 5048057
Alignment:
Q  12 caaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 87  Q
    |||||||||||| | ||||||||||| |||||||| ||||||| |||||||| | ||||||| |||| ||||||||    
T  5047982 caaaggcctagattattctagttttaaaaacatctacaagcacctataaatatacttatatgagtgcaattgtatt 5048057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 5046572 - 5046625
Alignment:
Q  134 atattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaat 187  Q
    |||||||||||| ||||||||||||| ||||||||| ||||| | |||||||||    
T  5046572 atattctctcctcctacaatgagctacttaccaatgcgtgtccttttgtccaat 5046625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 5047343 - 5047396
Alignment:
Q  134 atattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaat 187  Q
    |||||||||||| ||||||||||||| ||||||||| ||||| | |||||||||    
T  5047343 atattctctcctcctacaatgagctacttaccaatgcgtgtccttttgtccaat 5047396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 12 - 235
Target Start/End: Original strand, 24853338 - 24853562
Alignment:
Q  12 caaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatttaaacatttaa-atacaattacaa 110  Q
    |||||||||| | | |||||||| || |||||||||| | ||| |||||||||| |||| ||| ||| |||||||| || | ||||| || ||||  |||    
T  24853338 caaaggcctaaattattctagttctaaaaacatcttctaacacctataaatagacttatttggatgcaattgtattcaagcctttaagatgcaatgtcaa 24853437  T
Q  111 ta-tattaagggcttccatatactatattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaatgctattaaccattgtaccacta 209  Q
    || |||| | ||||||   |||  ||||||| |||| ||||||||||||| |||||||| |||||| ||||||||||||||| ||| || |  |||||||    
T  24853438 taatattgaaggcttcatcatatcatattctttcctcctacaatgagctaattaccaatatgtgtcctcttgtccaatgctactaaacactccaccacta 24853537  T
Q  210 gctcccacaatatatattttctaaca 235  Q
    ||||| ||| ||||| ||||||||||    
T  24853538 gctcctacactatat-ttttctaaca 24853562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 229
Target Start/End: Original strand, 24856353 - 24856448
Alignment:
Q  134 atattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaatgctattaaccattgtaccactagctcccacaatatatatttt 229  Q
    |||||||||||| ||||||||||||| |||||||| |||||| ||||||||||||||| ||| || |  |||||||||||  |  |||||||||||    
T  24856353 atattctctcctcctacaatgagctaattaccaatatgtgtcatcttgtccaatgctactaaacactccaccactagctcatatgatatatatttt 24856448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 28787952 - 28788027
Alignment:
Q  12 caaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 87  Q
    |||||||||||| | |||||||| ||||||||||||||| ||| ||||||||||  ||||||||||| ||||||||    
T  28787952 caaaggcctagattattctagttctagaaacatcttcaaacacctataaatagacatatatgggtgcaattgtatt 28788027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 51246614 - 51246689
Alignment:
Q  12 caaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 87  Q
    |||||||||||| | |||||||| ||||||||||| ||||||| ||||| |||| |||||||||||| ||||||||    
T  51246614 caaaggcctagattattctagttctagaaacatctacaagcacctataagtagacttatatgggtgcaattgtatt 51246689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 17525597 - 17525522
Alignment:
Q  12 caaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 87  Q
    |||||||||||| | |||||||| ||||||||||| ||||| |||||||||||| ||||||| |||  ||||||||    
T  17525597 caaaggcctagattattctagttctagaaacatctacaagcgcttataaatagacttatatgtgtgaaattgtatt 17525522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 230
Target Start/End: Original strand, 28787018 - 28787223
Alignment:
Q  30 tagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatttaa-acatttaaatacaat-tacaatatattaagggctt--c 125  Q
    ||||| ||||||||||||||||||| ||||||||||  ||||| ||||| |||||||| ||  | |||| || |||| || |  ||||| | |||||  |    
T  28787018 tagttctagaaacatcttcaagcacctataaatagacatatattggtgcaattgtattcaagccttttagatgcaatgtatataatattgaaggcttcac 28787117  T
Q  126 ca-tatactatattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaatgctattaaccattgtaccactagctcccacaatatat 224  Q
    ||  |||  ||||| |||||| ||| |||||| || |||| |||||||||| |||||| |||||||| |||||| | ||||| ||||||| ||| |||||    
T  28787118 caccatatcatattatctcctcctataatgaggtaattactaatgtgtgtcctcttgttcaatgctactaaccactctaccattagctcctacactatat 28787217  T
Q  225 attttc 230  Q
     |||||    
T  28787218 tttttc 28787223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 51246738 - 51246788
Alignment:
Q  134 atattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtcc 184  Q
    |||||||||||| ||||||||||||| || | |||||||||| ||||||||    
T  51246738 atattctctcctcctacaatgagctaattcctaatgtgtgtcctcttgtcc 51246788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 6272 - 6460
Alignment:
Q  12 caaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatttaaacattt-aaatacaattacaa 110  Q
    |||||||||||| | |||||||| |||||||| |||||||||| |||||||||| |||||||||||  |||||||| || | ||| | || ||||  |||    
T  6272 caaaggcctagattattctagttctagaaacagcttcaagcacctataaatagacttatatgggtgaaattgtattcaagcctttgagatgcaatgtcaa 6371  T
Q  111 t-atattaagggcttccatatactatattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaatgctattaacca 198  Q
    | ||||| | ||||||   | |  ||||| |||||| ||| ||||||||| || | |||||||||| ||||||||||||||| ||||||    
T  6372 taatattgaaggcttcacaaaatcatattatctcctcctataatgagctaattcctaatgtgtgtcatcttgtccaatgctactaacca 6460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 22622481 - 22622406
Alignment:
Q  12 caaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 87  Q
    ||||| |||||| | ||||| || |||||||||||||| ||||||||||||||  |||||||||||| ||||||||    
T  22622481 caaagacctagattattctaattctagaaacatcttcaggcacttataaataggcttatatgggtgcaattgtatt 22622406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 29371922 - 29371961
Alignment:
Q  39 aaacatcttcaagcacttataaatagaattatatgggtgc 78  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  29371922 aaacatcttcaagcacttataaatagatttatatgggtgc 29371961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 22056530 - 22056427
Alignment:
Q  133 tatattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaatgctattaaccattgtaccactagctcccacaatatatattttcta 232  Q
    |||||||||||||  ||||||||| || |||| ||| |||||| ||||||||||||||| |||| | | ||||| | ||||| ||| ||||| ||||| |    
T  22056530 tatattctctcctcatacaatgagttaattacaaatatgtgtcctcttgtccaatgctactaacaaatctaccattggctcctacactatat-ttttcca 22056432  T
Q  233 acaat 237  Q
    |||||    
T  22056431 acaat 22056427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 22055571 - 22055518
Alignment:
Q  12 caaaggcctagactcttctagttttagaaacatcttcaagcacttataaataga 65  Q
    ||||| |||||| | || ||||| ||||| ||||||||||||||||||||||||    
T  22055571 caaagacctagattattttagttctagaatcatcttcaagcacttataaataga 22055518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 12739334 - 12739409
Alignment:
Q  12 caaaggcctagactcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 87  Q
    |||| ||||||| | || ||||| ||||||||||| ||||||  ||||||||||||||| ||| ||| ||||||||    
T  12739334 caaaagcctagattattttagttctagaaacatctacaagcatctataaatagaattatttggatgcaattgtatt 12739409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 12738201 - 12738258
Alignment:
Q  30 tagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 87  Q
    ||||| ||||||||||| ||||||| |||||||| | |||| ||||||| ||||||||    
T  12738201 tagttctagaaacatctacaagcacctataaataaacttatttgggtgcaattgtatt 12738258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 1275291 - 1275221
Alignment:
Q  28 tctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatttaaacatttaa 98  Q
    ||||||| |||||||| |||||||||| ||||| || |  ||||||||||| |||||||| |||| |||||    
T  1275291 tctagttctagaaacaccttcaagcacctataagtataggtatatgggtgcaattgtattcaaacgtttaa 1275221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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