View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19248_low_2 (Length: 585)
Name: NF19248_low_2
Description: NF19248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19248_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 102 - 384
Target Start/End: Complemental strand, 45469239 - 45468941
Alignment:
| Q |
102 |
aaagatagtagcgcaagagtggtatggtatggcataagtgttttaagtggttgcaatcgaattttgtgaggttgtattatgctaaccataaattctaggt |
201 |
Q |
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| T |
45469239 |
aaagatagtagcacaagagtggt-----atggcataagtgttttaagtggttgcaatcggattttgtgaggttgtattatgctaaccataaattctaggt |
45469145 |
T |
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| Q |
202 |
ttaagaaacttattttcacttttctttttccttctcaaat--tctgtctttttaattctctcgcctaataacaaatcaacaacttagatt---------- |
289 |
Q |
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| T |
45469144 |
ctaagaaacttattttcacttttctttttccttctcaaattctctgtctttttaattctctcgcctaataacaaatcaacaacttagatttcactagact |
45469045 |
T |
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| Q |
290 |
---------cataggatttcgtaaatactgtgctcaccgactaaatcatcatcagtatttaataattgactataggtatcctaacatcccataaagattt |
380 |
Q |
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| T |
45469044 |
atcatgtaacataggatttcgtaaatactgtgctcaccgactaaatcatcatcagtatttaataattgactataggtatcctaacatcccataaagattt |
45468945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 45469438 - 45469362
Alignment:
| Q |
10 |
attattcttcttggtgtttgattgtgaaatttcactttctgagactagtaaagacgtgattttcccaatcttgatgg |
86 |
Q |
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| T |
45469438 |
attattcttcttggtgtttgattgtgaaatttcactttcagagactagtaaagacgtgattttcccaatcttgatgg |
45469362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 293 - 384
Target Start/End: Original strand, 39220059 - 39220155
Alignment:
| Q |
293 |
aggatttcgtaaatactgtgctca---ccgactaaatcatcatcagtatttaataat--tgactataggtatcctaacatcccataaagatttgctt |
384 |
Q |
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| T |
39220059 |
aggatttggtaaatactgtgctgaataccgactaaatcatcatcaatatttagtaatattgactataggtatccgaacatcccataaagatttgctt |
39220155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 39219758 - 39219809
Alignment:
| Q |
76 |
aatcttgatggatcaaagataaccgaaaagatagtagcgcaagagtggtatgg |
128 |
Q |
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| T |
39219758 |
aatcttggtggatcaaagataacc-aaaaaatagtggcgcaagagtggtatgg |
39219809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 39219896 - 39219966
Alignment:
| Q |
211 |
ttattttcacttttctttttccttctcaaattct--gtctttt-taattctctcgcctaataacaaatcaa |
278 |
Q |
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| T |
39219896 |
ttattttcaattttctttttcagtctcaaattctccgtcttttttaattctctcgcttaataataaatcaa |
39219966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 514 - 570
Target Start/End: Original strand, 12271668 - 12271724
Alignment:
| Q |
514 |
caggtttgcctatatggatccatcaaaactaccacaaataggacacatgtagcacat |
570 |
Q |
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| T |
12271668 |
caggtttgtctatatggatccatcaaaactagcacaaataggacacatgtagcacat |
12271724 |
T |
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