View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19248_low_4 (Length: 399)

Name: NF19248_low_4
Description: NF19248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19248_low_4
NF19248_low_4
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-380)||(107175-107554)
[»] chr3 (2 HSPs)
chr3 (1-154)||(21949200-21949353)
chr3 (276-313)||(45297552-45297589)
[»] chr4 (3 HSPs)
chr4 (276-382)||(11029778-11029884)
chr4 (276-341)||(17512186-17512251)
chr4 (276-339)||(33370857-33370920)
[»] chr1 (2 HSPs)
chr1 (278-328)||(30780977-30781027)
chr1 (276-313)||(34716427-34716464)
[»] chr8 (3 HSPs)
chr8 (276-339)||(37562298-37562361)
chr8 (280-321)||(37563032-37563073)
chr8 (276-313)||(42346113-42346150)
[»] chr5 (4 HSPs)
chr5 (276-330)||(26711571-26711625)
chr5 (276-330)||(26981308-26981362)
chr5 (276-341)||(4555440-4555505)
chr5 (280-345)||(32943524-32943589)
[»] chr7 (1 HSPs)
chr7 (276-309)||(40320422-40320455)
[»] chr6 (1 HSPs)
chr6 (276-313)||(28975343-28975380)


Alignment Details
Target: scaffold0003 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 107554 - 107175
Alignment:
Q  1 aacaaattaaagttcgtcgacggtttgatctcggctcctgatccttttcatcctagttatgatgcttgggagaggtgtaacaatcttgtccattcatgga 100  Q
    |||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  107554 aacaaattcaagttcgtcgacggttcgatcttggctcctgatccttttcatcctagttatgatgcttgggagaggtgtaacaatcttgtccattcatgga 107455  T
Q  101 ttatcaattatgtctctccttcaattgctcagagtatcatctacaaatatcttgcttgtttcagaaatgtgatttttgagagtgattgcgagagtttgat 200  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  107454 ttatcaattatgtctctccttcaattgctcagagtattatctacaaatatcttgcttgtttcagaaatgtgatttttgagagggattgcgagagtttgat 107355  T
Q  201 tatgcagattcgtaatgacattgaggaacctagaacctatgttgggaatatagtgaaagggataagatatcagtgggggtttagcatgggaaagcagagt 300  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  107354 tatgcagattcgtagtgacattgaggaacctagaacctatgttgggaatatagtgaaagggataagatatcagtgggggtttagcatgggaaagcagagt 107255  T
Q  301 tgtttcccatcatacgaaagtaaatgttagtcattagattaggtaaggaacatattcttattatacactctcatcactag 380  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  107254 tgtttcccatcatacgaaagtaaatgttagttattagattaagtaaggaacatattcttattatacactctcatcactag 107175  T

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Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 21949200 - 21949353
Alignment:
Q  1 aacaaattaaagttcgtcgacggtttgatctcggctcctgatccttttcatcctagttatgatgcttgggagaggtgtaacaatcttgtccattcatgga 100  Q
    |||||||| |||||||||||||||| |||  ||| || ||||||||||||||| ||||| |||||||||||||| |||||| ||||||| ||||||||||    
T  21949200 aacaaattcaagttcgtcgacggttcgattccggttcttgatccttttcatccgagttacgatgcttgggagagatgtaactatcttgtacattcatgga 21949299  T
Q  101 ttatcaattatgtctctccttcaattgctcagagtatcatctacaaatatcttg 154  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||    
T  21949300 ttatcaattttgtctctccttcaattgctcagagtattatctacaaagatcttg 21949353  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 45297552 - 45297589
Alignment:
Q  276 ggggtttagcatgggaaagcagagttgtttcccatcat 313  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  45297552 ggggtttagtatgggaaaggagagttgtttcccatcat 45297589  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 276 - 382
Target Start/End: Complemental strand, 11029884 - 11029778
Alignment:
Q  276 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagattaggtaaggaacatattcttattatacactctcatc 375  Q
    |||||||||||||  |||  ||||||||||  ||||| | |||||||||| |||| |||||||| | |||| ||||| | |||||||||||||||||| |    
T  11029884 ggggtttagcatgaaaaatgagagttgtttttcatcacaggaaagtaaatattagacattagatcaagtaaagaacacaatcttattatacactctcaac 11029785  T
Q  376 actagat 382  Q
    || ||||    
T  11029784 acgagat 11029778  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 341
Target Start/End: Complemental strand, 17512251 - 17512186
Alignment:
Q  276 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagatta 341  Q
    ||||||||||||| ||| | | ||||||||||||||||  |||||||||| |||||||||||||||    
T  17512251 ggggtttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttagtcattagatta 17512186  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 339
Target Start/End: Complemental strand, 33370920 - 33370857
Alignment:
Q  276 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagat 339  Q
    ||||||||||||||||||| | | |||||||||| |||  |||||| |||||||| ||||||||    
T  33370920 ggggtttagcatgggaaaggatacttgtttcccaccatgggaaagttaatgttagccattagat 33370857  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 328
Target Start/End: Complemental strand, 30781027 - 30780977
Alignment:
Q  278 ggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgtt 328  Q
    |||||| |||||||||| ||||||||||||||||||  |||||||||||||    
T  30781027 ggtttaacatgggaaaggagagttgtttcccatcatgggaaagtaaatgtt 30780977  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 34716427 - 34716464
Alignment:
Q  276 ggggtttagcatgggaaagcagagttgtttcccatcat 313  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  34716427 ggggtttagcatgggaatggagagttgtttcccatcat 34716464  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 339
Target Start/End: Original strand, 37562298 - 37562361
Alignment:
Q  276 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagat 339  Q
    ||||||||||||||||||| ||| |||||||||| |||| |||||| ||| |||  ||||||||    
T  37562298 ggggtttagcatgggaaaggagaattgtttcccaccataggaaagtcaattttaaccattagat 37562361  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 37563073 - 37563032
Alignment:
Q  280 tttagcatgggaaagcagagttgtttcccatcatacgaaagt 321  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||    
T  37563073 tttagcatgggaaagaagagttgtttctcatcataggaaagt 37563032  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 42346150 - 42346113
Alignment:
Q  276 ggggtttagcatgggaaagcagagttgtttcccatcat 313  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  42346150 ggggtttagcatgggaatggagagttgtttcccatcat 42346113  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 330
Target Start/End: Original strand, 26711571 - 26711625
Alignment:
Q  276 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttag 330  Q
    ||||||||| ||||||||| | |||||||||||| |||| |||||||||| ||||    
T  26711571 ggggtttagtatgggaaaggaaagttgtttcccaacataggaaagtaaattttag 26711625  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 330
Target Start/End: Original strand, 26981308 - 26981362
Alignment:
Q  276 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttag 330  Q
    ||||||||| ||||||||| | |||||||||||| |||| |||||||||| ||||    
T  26981308 ggggtttagtatgggaaaggaaagttgtttcccaacataggaaagtaaattttag 26981362  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 341
Target Start/End: Complemental strand, 4555505 - 4555440
Alignment:
Q  276 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagatta 341  Q
    ||||||||||||||||||    |||| |||||||||||  |||||| |||||||| ||||||||||    
T  4555505 ggggtttagcatgggaaatggaagttctttcccatcatgtgaaagttaatgttagccattagatta 4555440  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 345
Target Start/End: Original strand, 32943524 - 32943589
Alignment:
Q  280 tttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagattaggta 345  Q
    ||||||||||||||| | | |||||||||| |||  |||||| |||||||| |||||||| |||||    
T  32943524 tttagcatgggaaaggatatttgtttcccaccatgggaaagttaatgttagccattagatcaggta 32943589  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 309
Target Start/End: Complemental strand, 40320455 - 40320422
Alignment:
Q  276 ggggtttagcatgggaaagcagagttgtttccca 309  Q
    ||||||||||||||||||| ||||||||||||||    
T  40320455 ggggtttagcatgggaaaggagagttgtttccca 40320422  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 28975343 - 28975380
Alignment:
Q  276 ggggtttagcatgggaaagcagagttgtttcccatcat 313  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  28975343 ggggtttagcatgggaaaggagagttgtttcctatcat 28975380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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