View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19249_high_14 (Length: 312)
Name: NF19249_high_14
Description: NF19249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19249_high_14 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 166 - 312
Target Start/End: Original strand, 28447982 - 28448128
Alignment:
| Q |
166 |
tttgggctttggctggccttggcttcggtgttcctctctccggggttcctattttgtgcgttggaagttacggccttcaatcttttgttggagtggttgt |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28447982 |
tttgggctttggctggccttggcttcggtgttcctctctctggggttcctattttgtgcgttggaagttacggccttcaatcttttgttggagtggttgt |
28448081 |
T |
|
| Q |
266 |
ctatttctataggcgtcaggcctacagacctcccctctacatcgatg |
312 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
28448082 |
ctatttctataggcatcagacctacagacctcccctctacatcgatg |
28448128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 18690607 - 18690684
Alignment:
| Q |
169 |
gggctttggctggccttggcttcggtgttcctctctccggggttcctattttgtgcgttggaagttacggccttcaat |
246 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| | |||||||| ||| ||||||||||||||| |||||||| |
|
|
| T |
18690607 |
gggctttggttggccttggcttcggtgttcctctctctgaggttcctagtttttgcgttggaagttacaaccttcaat |
18690684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University