View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19249_high_2 (Length: 571)
Name: NF19249_high_2
Description: NF19249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19249_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 30 - 548
Target Start/End: Complemental strand, 10802402 - 10801884
Alignment:
| Q |
30 |
ttcacagaggttaataatttcaacatgagttataatctcttctctgggaaacttccaccagaaattttcaacatcacaggcttgaaaagcttagatataa |
129 |
Q |
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||||||||||||| | ||||||| | || ||||| | |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
10802402 |
ttcacagaggttattgatttcaatctaagcaataatttattctctggtaaacttccaccagaaattttcaacctcacaaacttgaaaagcttagatatag |
10802303 |
T |
|
| Q |
130 |
gcagaaacaatttttccggtcagttcccaaaaggaatttctaaactaaaaaatttggttgtacttgatgccattagcaacagcttttcaggtcaattacc |
229 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||| |||| |||||||||||||||||| |
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| T |
10802302 |
acacaaacaatttttccggtcagttcccaaaaggaatttctaaactcaaaagtttggttgtatttgatgcctgggaaaacaacttttcaggtcaattacc |
10802203 |
T |
|
| Q |
230 |
tgctgaattttcagaattggaaaatcttaagattctcaacctagttgaaaattccttcagtggaagcattccatttgaatatggttctttcagaaacctt |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
10802202 |
tgctgaattttcagaattggaaaatcttaagattctcaacctatatggaaattccttcagtggaagcattccatctgaatatggttctttcagaagcctt |
10802103 |
T |
|
| Q |
330 |
gagtttcttcttctagctgaaaattctctcacaggaagtataccaccagaacttggtaacctcaaaacagtgactcacatggaaattggctccaattctt |
429 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10802102 |
gagtctcttcttctagctgctaattctctcacaggaagtataccaccagaacttggtaacctcaaaacagtgactagcatggaaattggctccaattctt |
10802003 |
T |
|
| Q |
430 |
accagggtttcattcctcctcaactaggtaacatgagccaacttcagtatcttgacattgcaggtgcaaatctatatggtcctattccaaaggaactttc |
529 |
Q |
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| T |
10802002 |
accagggtttcattccacctcaactaggtaatatgagtcagcttcagaatcttgagatagcagatgctaatctatctggttctattccaaaggaactttt |
10801903 |
T |
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| Q |
530 |
aaatctcaccaatttgcaa |
548 |
Q |
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| T |
10801902 |
cagtctcaccaatttgcaa |
10801884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 30 - 551
Target Start/End: Original strand, 21939701 - 21940222
Alignment:
| Q |
30 |
ttcacagaggttaataatttcaacatgagttataatctcttctctgggaaacttccaccagaaattttcaacatcacaggcttgaaaagcttagatataa |
129 |
Q |
| |
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|||||| |||||| | ||||||| || || |||||| ||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
21939701 |
ttcacaaaggttattgatttcaatataagctataatttcttctcagggaaacttccaccagaaattttcaacttcacaagcttgaaaagcttagatataa |
21939800 |
T |
|
| Q |
130 |
gcagaaacaatttttccggtcagttcccaaaaggaatttctaaactaaaaaatttggttgtacttgatgccattagcaacagcttttcaggtcaattacc |
229 |
Q |
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|||||||||||||||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
21939801 |
gcagaaacaatttttcaggtcaattcccaaaaggaattccaaaactaaaaaatttggttgtacttgatgcctttagcaacagcttttctggtcaattacc |
21939900 |
T |
|
| Q |
230 |
tgctgaattttcagaattggaaaatcttaagattctcaacctagttgaaaattccttcagtggaagcattccatttgaatatggttctttcagaaacctt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || || || |||||| |||| |||||||| ||||||||||||||||| || ||| |
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| T |
21939901 |
tgctgaattttcagaattggaaaatcttaagattctcaacctagctggaagttacttcagaggaaccattccatctgaatatggttctttcaaaagcctg |
21940000 |
T |
|
| Q |
330 |
gagtttcttcttctagctgaaaattctctcacaggaagtataccaccagaacttggtaacctcaaaacagtgactcacatggaaattggctccaattctt |
429 |
Q |
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||||||||| |||||||| ||||||||| | |||| |||||||||||||||||||||||| |||||||||||||||||| ||||||| |||| || |
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| T |
21940001 |
aagtttcttcatctagctggaaattctctatccggaaatataccaccagaacttggtaaccttgtaacagtgactcacatggagattggctacaatattt |
21940100 |
T |
|
| Q |
430 |
accagggtttcattcctcctcaactaggtaacatgagccaacttcagtatcttgacattgcaggtgcaaatctatatggtcctattccaaaggaactttc |
529 |
Q |
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| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||| |||| |||| |||||||||||||| |
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| T |
21940101 |
atcagggttttattccacctcaactaggtaacatgagccagcttcagtatcttgacatagcaggagctaatctatctggttctataccaaaggaactttc |
21940200 |
T |
|
| Q |
530 |
aaatctcaccaatttgcaatca |
551 |
Q |
| |
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|||||||| |||||||||||| |
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| T |
21940201 |
caatctcacaaatttgcaatca |
21940222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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