View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19249_high_9 (Length: 354)
Name: NF19249_high_9
Description: NF19249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19249_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 46442170 - 46442404
Alignment:
| Q |
18 |
ccctagaattaatgaattttaacacaatcagcgcacctcaatttgaatagcttttt-ggcggatagttgttatatttatttannnnnnnactaaatttag |
116 |
Q |
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| T |
46442170 |
ccctagaattaatgaattttaacacaatcagcgcac------ttgaatagcttttttggcggatagttgttatatttatttatttttt-actaaatttag |
46442262 |
T |
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| Q |
117 |
tacaatgtctatggcattattcttgnnnnnnnnnnnnnnnnaaaattaaaaatattgcattataaaaatgctatacagggtgtgtgaagaacagaccaat |
216 |
Q |
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| T |
46442263 |
cacaatgtctatggcattattcttgttttttttttttt----aaattaaaaatattgcattataaaaatgctatacagggtgtgtgaagaacagaccaat |
46442358 |
T |
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| Q |
217 |
aatataaaaatcgccataaaaatatgataagatgattctacatact |
262 |
Q |
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| T |
46442359 |
aatataaaaatcgccataaaaatatgataagatgattctacatact |
46442404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 46429358 - 46429452
Alignment:
| Q |
164 |
aaaaatattgcattataaaaatgctatacagggtgtgtgaagaacagaccaataatataaaaatcgccat-aaaaatatgataagatgattctac |
257 |
Q |
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| T |
46429358 |
aaaaaaattgcattttaaaaatgctacacaaggtgtgtgaagaacagaccaataatacaaaaattaccataaaaaatatgataagatgattctac |
46429452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 46429238 - 46429307
Alignment:
| Q |
18 |
ccctagaattaatgaattttaacacaa-tcagcgcacctcaatttgaatagctttttggcggatagttgt |
86 |
Q |
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| T |
46429238 |
ccctagaattaatgaattttaacataaatcagcgcacctcaatttgaagagctttttggcggatagttgt |
46429307 |
T |
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