View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19249_low_1 (Length: 350)
Name: NF19249_low_1
Description: NF19249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19249_low_1 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 15689596 - 15689266
Alignment:
| Q |
18 |
tgaaaaaccttttggttgtcgcacaaccaatggcacaattgttgcagtaattggttgtttgatggttcaacaacgtggctatcaactgcttcggcagcat |
117 |
Q |
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| T |
15689596 |
tgaaaaaccttttggttgtcgcacaaccaatggcacaattgttgccgtaattggttgtttgatggttcaacaacgtggctatcaactgcttcggcagcat |
15689497 |
T |
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| Q |
118 |
ttgatcaaacccttgaagggaataacacaacttttcaagtccaggtgcattacccatcctattcatgggtttcaagagagatgttgattaatggattcgg |
217 |
Q |
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| T |
15689496 |
ttgatcaaacccttgaagggaataacacaacttttcaagtccaagtgcattacccatcctattcatgggtttcaagagagatgttgattaatggattcag |
15689397 |
T |
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| Q |
218 |
tacaagaaaattttccataacactcttatgctttaatcaatatccctcattgctattttaatattcttatgctttaattgaaaatgatctaaagtaagag |
317 |
Q |
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| T |
15689396 |
tacaagaaaattttccataaca--cttatgctttaatcaatatccctcattgctattttaatattcttatgctttaattgaaaatgatctaaagtaagag |
15689299 |
T |
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| Q |
318 |
gttcatcacataggaagcataaactcatttcca |
350 |
Q |
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| T |
15689298 |
gttcatcacataggaagcataaactcatttcca |
15689266 |
T |
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Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 253 - 350
Target Start/End: Original strand, 55286831 - 55286930
Alignment:
| Q |
253 |
atcaatatccctcattgctattttaatattcttatgcttta--attgaaaatgatctaaagtaagaggttcatcacataggaagcataaactcatttcca |
350 |
Q |
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| T |
55286831 |
atcaatatccctcgttactatcttaacattcttatgctttataattgaaaatgattcaaagtaagaggctcatcacataagaaacatacactcatttcca |
55286930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 30896870 - 30896910
Alignment:
| Q |
310 |
agtaagaggttcatcacataggaagcataaactcatttcca |
350 |
Q |
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| T |
30896870 |
agtaaaaggttcatcacataagaaacataaactcatttcca |
30896910 |
T |
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