View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1924_high_12 (Length: 225)
Name: NF1924_high_12
Description: NF1924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1924_high_12 |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 16874054 - 16873836
Alignment:
| Q |
1 |
caattgaatatgatgattcaaatgaaagaaaacttgagaattgaagactataagaattgaagacagagtgagattgttagatgatgcaaaaaatgaatct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16874054 |
caattgaatatgatgattcaaatgaaagaaaacttgagaattgaagactataagaattgaagacagagtgagattgttagatgatgcaaaaaatgaatct |
16873955 |
T |
|
| Q |
101 |
gtaaatttacaattttcacaaagcatataaaggatttaggaagggtactacagaatgtttctaaagaaattaagcattgattaatccaaaccaaattttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
16873954 |
gtaaatttacaattttcacaaagcatataaaggatttaggaagggtactacagaatgtttctaaagaaattaagcattgattaatccaaatcaaattttc |
16873855 |
T |
|
| Q |
201 |
tgttcaaaactgatcaacc |
219 |
Q |
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||||||||||||||||||| |
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| T |
16873854 |
tgttcaaaactgatcaacc |
16873836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 16572232 - 16572041
Alignment:
| Q |
1 |
caattgaatatgatgattcaaatgaaagaaaacttgagaattgaagactataagaattgaagacagagtgagattgttagatgatgcaaaaaatgaatct |
100 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
16572232 |
caattgaatatgatgattcaaatgaaagaaaacttaataattgaagactataagaatcgaagacagagtgagattattagaagatgcaaaaaatgaatct |
16572133 |
T |
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| Q |
101 |
gtaaatttacaattttc-acaaagcatataaaggatttaggaagggtactacagaatgtttctaaagaaattaagcattgattaatccaaac |
191 |
Q |
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| T |
16572132 |
gtaaatttacaattttcaacaaagcatgtaaaggatttaggaagggtactacagaatgtttctaaagaaattaagcattgattaatccaaac |
16572041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 5 - 189
Target Start/End: Complemental strand, 16580190 - 16580005
Alignment:
| Q |
5 |
tgaatatgatgattcaaatgaaagaaaacttgagaattgaagactataagaattgaagacagagtgagattgttagatgatgcaaaaaatgaatctgtaa |
104 |
Q |
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||||||||||||||||||||||||||||| | | |||||| |||| ||||||| ||||||||||||||||||||||| |||||| ||||||||| ||||| |
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| T |
16580190 |
tgaatatgatgattcaaatgaaagaaaacataataattgaggactgtaagaatcgaagacagagtgagattgttagaagatgcataaaatgaatatgtaa |
16580091 |
T |
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| Q |
105 |
atttacaattttc-acaaagcatataaaggatttaggaagggtactacagaatgtttctaaagaaattaagcattgattaatccaa |
189 |
Q |
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| T |
16580090 |
atttacaattttcaacaaagcaaataaaggatttaggaagggtactacagaatgtttctaaataaattaatcattgattaatccaa |
16580005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 16615190 - 16615375
Alignment:
| Q |
5 |
tgaatatgatgattcaaatgaaagaaaacttgagaattgaagactataagaattgaagacagagtgagattgttagatgatgcaaaaaatgaatctgtaa |
104 |
Q |
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||||||||||||||||||||||||||||| | | |||||| |||| ||||||| ||||||||||||||||||||||| |||||| ||||||||| ||||| |
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| T |
16615190 |
tgaatatgatgattcaaatgaaagaaaacataataattgaggactgtaagaatcgaagacagagtgagattgttagaagatgcataaaatgaatatgtaa |
16615289 |
T |
|
| Q |
105 |
atttacaattttc-acaaagcatataaaggatttaggaagggtactacagaatgtttctaaagaaattaagcattgattaatccaa |
189 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
16615290 |
atttacaattttcaacaaagcaaataaaggatttaggaagggtactacagaatgtttctaaataaattaatcattgattaatccaa |
16615375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 71 - 188
Target Start/End: Original strand, 16783416 - 16783533
Alignment:
| Q |
71 |
agattgttagatgatgcaaaaaatgaatctgtaaatttacaattttca-caaagcatataaaggatttaggaagggtactacagaatgtttctaaagaaa |
169 |
Q |
| |
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|||||||||| ||| ||||||| ||||||| |||||||||||||||| |||| || |||| | ||||||||||| |||||||||||||||||| ||||| |
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| T |
16783416 |
agattgttagcagatacaaaaaaggaatctgcaaatttacaattttcatcaaatcaaataatg-atttaggaaggatactacagaatgtttctagagaaa |
16783514 |
T |
|
| Q |
170 |
ttaagcattgattaatcca |
188 |
Q |
| |
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| ||||||||||||||||| |
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| T |
16783515 |
taaagcattgattaatcca |
16783533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 43 - 188
Target Start/End: Original strand, 16977898 - 16978044
Alignment:
| Q |
43 |
gaagactataagaattgaagacagagtgagattgttagatgatgcaaaaaatgaatctgtaaatttacaattttc-acaaagcatataaaggatttagga |
141 |
Q |
| |
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|||||||| ||| || |||||| ||||| |||| |||| ||| ||||||||||||||| |||||| |||||||| ||||| |||| ||||||||| ||| |
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| T |
16977898 |
gaagactagaagcatccaagacaaagtgatattgctagaagatacaaaaaatgaatctgcaaattttcaattttcaacaaatcatacaaaggatttcgga |
16977997 |
T |
|
| Q |
142 |
agggtactacagaatgtttctaaagaaattaagcattgattaatcca |
188 |
Q |
| |
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||| ||||||| |||| | | ||||| ||||||||||||||||| |
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| T |
16977998 |
aggatactacaaaatgatggcatagaaagaaagcattgattaatcca |
16978044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 11526 - 11714
Alignment:
| Q |
1 |
caattgaatatgatgattcaaatgaaagaaaacttgagaattgaagactataagaattgaagacagagtgagattgttagatgatgcaaaaaatgaatct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| ||||||||||||| ||||| |||||||||||| |
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| T |
11526 |
caattgaatatgatgattcaaatgaaagaaaacttaataattgaagactataagaatcgaagacag--tgagattgttagaagatgctaaaaatgaatct |
11623 |
T |
|
| Q |
101 |
gtaaatttacaattttca-caaagcatataaaggatttaggaagggtactacagaatgtttctaaagaaattaagcattgattaatccaaa |
190 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11624 |
gtaaatttacaattttcatcaaagcatataaaggatttaggaagggtactacagaatgtttctaaagaaatcaagcattgattaatccaaa |
11714 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 32792574 - 32792500
Alignment:
| Q |
69 |
tgagattgttagatgatgcaaaaaatgaatctgtaaatttacaattttc-acaaagcatataaaggatttaggaa |
142 |
Q |
| |
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|||||||| |||| ||| ||||||||||||||| ||||||||||| ||| ||||| ||||||||||||||||||| |
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| T |
32792574 |
tgagattgctagaagatacaaaaaatgaatctgcaaatttacaatattcaacaaatcatataaaggatttaggaa |
32792500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 155
Target Start/End: Complemental strand, 14536039 - 14535925
Alignment:
| Q |
39 |
aattgaagactataagaattgaagacagagtgagattgttagatgatgcaaaaaatgaatctgtaaatttacaattttcacaaagcatataaaggattta |
138 |
Q |
| |
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|||||||||||| ||| || |||||| ||||||||||| || |||||||||| |||| || || |||||||||| ||||| ||||||||||||| | |
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| T |
14536039 |
aattgaagactagaagcatccaagacaaagtgagattgtgtgaagatgcaaaaattgaaact--aagtttacaatttcaacaaatcatataaaggattca |
14535942 |
T |
|
| Q |
139 |
ggaagggtactacagaa |
155 |
Q |
| |
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|||||| |||||||||| |
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|
| T |
14535941 |
ggaaggatactacagaa |
14535925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 142
Target Start/End: Complemental strand, 21628849 - 21628765
Alignment:
| Q |
60 |
aagacagagtgagattgttagatgatgcaaaaaatgaatctgtaaatttacaattttc-acaaagcatat-aaaggatttaggaa |
142 |
Q |
| |
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|||||| |||||||||| | || ||| ||||||||||||| ||||||||||| ||| ||||| ||||| |||||||||||||| |
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| T |
21628849 |
aagacaaagtgagattgctggaagatataaaaaatgaatctacaaatttacaatattcaacaaatcatataaaaggatttaggaa |
21628765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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