View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1924_high_5 (Length: 342)
Name: NF1924_high_5
Description: NF1924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1924_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 14 - 325
Target Start/End: Original strand, 29719673 - 29719984
Alignment:
| Q |
14 |
ttctgatggggcaatcattgcaatcacatatggagtgatataaggttcattaattattatatatattgtttaattagaactaagattccacagttggact |
113 |
Q |
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| T |
29719673 |
ttctgatggggcaatcattgcaatcacatatggagtgatataaggttcattaattattatatatattgtttaattagaactaagattccacagttggact |
29719772 |
T |
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| Q |
114 |
gccttcacttttaattttggcaatatagattttgatgttatgctcctctatttctattcaactgtaagtttgggaactgtccaaactattaatatgcatc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29719773 |
gccttcacttttaattttggcaatatagattttgatgttatgctcctctatttctattcaattgtaagtttgggaactgtccaaactattaatatgcatc |
29719872 |
T |
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| Q |
214 |
atatatcaattagattatcgtgataataacacaaattacagaagttttctgctgtcaacgaaccaataaaagacattattgtggtctattcatatttttc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29719873 |
atatatcaattagattatcgtgataataacacaaattacagaagttttctgctgtcaacgaaccaataaaagacattattgtggtctattcatatttttc |
29719972 |
T |
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| Q |
314 |
atcgacgataat |
325 |
Q |
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|||||||||||| |
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| T |
29719973 |
atcgacgataat |
29719984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 22 - 255
Target Start/End: Original strand, 29659701 - 29659930
Alignment:
| Q |
22 |
gggcaatcattgcaatcacatatggagtgatataaggttcattaattattatatatattgtttaattagaactaagattccacagttggactgccttcac |
121 |
Q |
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| T |
29659701 |
gggcaatcgttgcaatcacatacgaagtgatacgagattcataaattattatata----ggttaattagaactaagattccgcagttgcactgccttcac |
29659796 |
T |
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| Q |
122 |
ttttaattttggcaatatagattttgatgttatgctcctctatttctattcaactgtaagtttgggaactgtccaaactattaatatgcatcatatatca |
221 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
29659797 |
ttttaattatggcaatataaattttgatgttatgctcctctatttcttttcaattataagtttgggaactgtccaaagaattaatatgcatcatatgtca |
29659896 |
T |
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| Q |
222 |
attagattatcgtgataataacacaaattacaga |
255 |
Q |
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|||||| |||||||||||||||| |||||||||| |
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| T |
29659897 |
attagagtatcgtgataataacataaattacaga |
29659930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 125 - 235
Target Start/End: Complemental strand, 33160190 - 33160081
Alignment:
| Q |
125 |
taattttggcaatatagattttgatgttatgctcctctatttctattcaactgtaagtttgggaactgtccaaactattaatatgcatcatatatcaatt |
224 |
Q |
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| T |
33160190 |
taattttggcaatatagattttgatgtgatgctcctctatttcttttcaa-tataagtttgggaactgtccaaactattaatttaaatcatatatcaatt |
33160092 |
T |
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| Q |
225 |
agattatcgtg |
235 |
Q |
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| T |
33160091 |
aggttgtcgtg |
33160081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 19469357 - 19469423
Alignment:
| Q |
83 |
ttaattagaactaagattccacagttggactgccttcacttttaattttggcaa-tatagattttga |
148 |
Q |
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| T |
19469357 |
ttaactagaattaagattcctcagttgcactgccttcactttcaattttggcaattatagattttga |
19469423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 19469534 - 19469600
Alignment:
| Q |
178 |
taagtttgggaactgtccaaactattaatatgcatcatatatcaattagattatcgtgataataaca |
244 |
Q |
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|||| ||||||||||||||||||||||| ||| |||| |||| ||| ||||||||||||| ||||| |
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| T |
19469534 |
taagcttgggaactgtccaaactattaacttgcttcatctatccattggattatcgtgatagtaaca |
19469600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 19469312 - 19469352
Alignment:
| Q |
14 |
ttctgatggggcaatcattgcaatcacatatggagtgatat |
54 |
Q |
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| T |
19469312 |
ttctgatggggaaatcattgcaatcacatatgcagtgatat |
19469352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 148
Target Start/End: Original strand, 6586697 - 6586792
Alignment:
| Q |
49 |
tgatataaggttcattaattattatatatattgtttaattagaactaagattccacagttggactgccttcacttttaattttggcaatatagattttga |
148 |
Q |
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| T |
6586697 |
tgatatgaggttcattaattattatat----tggctaattagaactatgattcttcagctgcactgccttcactttcaattttttcaatatagattttga |
6586792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 10170813 - 10170871
Alignment:
| Q |
186 |
ggaactgtccaaactattaatatgcatcatatatcaattagattatcgtgataataaca |
244 |
Q |
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| T |
10170813 |
ggaagtgtccaaactattaacttgcttcatatatctattggattatcgtgatagtaaca |
10170871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 10178338 - 10178396
Alignment:
| Q |
186 |
ggaactgtccaaactattaatatgcatcatatatcaattagattatcgtgataataaca |
244 |
Q |
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|||| ||||||||||||||| ||| ||||||||| ||| ||||||||||||| ||||| |
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| T |
10178338 |
ggaagtgtccaaactattaacttgcttcatatatctattggattatcgtgatagtaaca |
10178396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 10170660 - 10170721
Alignment:
| Q |
88 |
tagaactaagattccacagttggactgccttcacttttaattttggcaa-tatagattttga |
148 |
Q |
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|||||||||| |||| ||||| ||| |||||||||| ||||||||||| |||||||||||| |
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| T |
10170660 |
tagaactaaggttccttagttgcacttccttcactttcaattttggcaattatagattttga |
10170721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 10178185 - 10178246
Alignment:
| Q |
88 |
tagaactaagattccacagttggactgccttcacttttaattttggcaa-tatagattttga |
148 |
Q |
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|||||||||| |||| ||||| ||| |||||||||| ||||||||||| |||||||||||| |
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| T |
10178185 |
tagaactaaggttccttagttgcacttccttcactttcaattttggcaattatagattttga |
10178246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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