View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1924_high_8 (Length: 253)
Name: NF1924_high_8
Description: NF1924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1924_high_8 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 41452316 - 41452536
Alignment:
| Q |
16 |
aagacaaatgtagtcacggcgttagtataaagaaattttttcaaccagccttgttcagcgtccctgagcgcagttattttagatagaaacttcatttccc |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41452316 |
aagacaaatgtagtcacggcgttagtataaagaaattttttcaaccagccttgttcagcgtccctgagcgcagttattttagatagaaacttcatttccc |
41452415 |
T |
|
| Q |
116 |
atccttgcagtttaaggatcctcatgttccttaaaatttcagatgtggtcttcattcttgtatcctttgactccatcaacttattttgaaacttctcttg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41452416 |
atccttgcagtttaaggatcctcatgttccttaaaatttcagatgtggtcttcattcttgtatcctttgactccatcaacttattttgaaacttctcttg |
41452515 |
T |
|
| Q |
216 |
caatgatcccaatggaacatt |
236 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
41452516 |
caatgatcccaatggaacatt |
41452536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 41439147 - 41439367
Alignment:
| Q |
16 |
aagacaaatgtagtcacggcgttagtataaagaaattttttcaaccagccttgttcagcgtccctgagcgcagttattttagatagaaacttcatttccc |
115 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41439147 |
aagacaaatgtagtaacggcgttagtataaagaaattttttcaaccagccttgttcagcgtccctgagcgcagttattttagatagaaacttcatttccc |
41439246 |
T |
|
| Q |
116 |
atccttgcagtttaaggatcctcatgttccttaaaatttcagatgtggtcttcattcttgtatcctttgactccatcaacttattttgaaacttctcttg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
41439247 |
atccttgcagtttaaggatcctcatgttccttaaaatttcagatgtggtcttcattcttgtatcctttgactccatcaactttttttgaaacttctcttg |
41439346 |
T |
|
| Q |
216 |
caatgatcccaatggaacatt |
236 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
41439347 |
taatgatcccaatggaacatt |
41439367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 14241302 - 14241521
Alignment:
| Q |
17 |
agacaaatgtagtcacggcgttagtataaagaaattttttcaaccagccttgttcagcgtccctgagcgcagttattttagatagaaacttcatttccca |
116 |
Q |
| |
|
||||||||||||||| ||| ||| |||||| |||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| |
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| T |
14241302 |
agacaaatgtagtcatggctgaagtgtaaagatattttttcaaccagccttgttcggcatccctgagtgcagttattttagatagaaacttcatttccca |
14241401 |
T |
|
| Q |
117 |
tccttgcagtttaaggatcctcatgttccttaaaatttcagatgtggtcttcattcttgtatcctttgactccatcaacttattttgaaacttctcttgc |
216 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| | ||||||||||||||||||||||| |||||||||||||||| |
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| T |
14241402 |
tccttgtagtttaaggatcctcatgttccttaaaatttcagacgtggttttcattctagcatcctttgactccatcaacttatcttgaaacttctcttgc |
14241501 |
T |
|
| Q |
217 |
aatgatcccaatggaacatt |
236 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
14241502 |
aatgatcccaatggaacatt |
14241521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 14372018 - 14371811
Alignment:
| Q |
18 |
gacaaatgtagtcacggcgttagtataaagaaattttttcaaccagccttgttcagcgtccctgagcgcagttattttagatagaaacttcatttcccat |
117 |
Q |
| |
|
|||||| |||||||| ||| |||||||||| | ||||||||||| || ||||| ||||| |||||| ||||||||||||| |||||||||||||||||| |
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|
| T |
14372018 |
gacaaacgtagtcacagcggaagtataaagatactttttcaaccacccctgttcggcgtctctgagctcagttattttagacagaaacttcatttcccat |
14371919 |
T |
|
| Q |
118 |
ccttgcagtttaaggatcctcatgttccttaaaatttcagatgtggtcttcattcttgtatcctttgactccatcaacttattttgaaacttctcttgca |
217 |
Q |
| |
|
||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| | |
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| T |
14371918 |
ccttgtagtttgaggatcctcatgtttcttaaaatttcagatgtggtcttcattctagtatcctttgactccatcaacttattatgtaacttctcttgga |
14371819 |
T |
|
| Q |
218 |
atgatccc |
225 |
Q |
| |
|
|||||||| |
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|
| T |
14371818 |
atgatccc |
14371811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 86 - 213
Target Start/End: Original strand, 22751094 - 22751221
Alignment:
| Q |
86 |
cagttattttagatagaaacttcatttcccatccttgcagtttaaggatcctcatgttccttaaaatttcagatgtggtcttcattcttgtatcctttga |
185 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||| |||||||||| |||||||||| |||| |||| |
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| T |
22751094 |
cagttatcttagacagaaacttcatttcccatccttgaagtttgagaatcctcatgttccttaaaatctcagatgtggccttcattcttttatctcttga |
22751193 |
T |
|
| Q |
186 |
ctccatcaacttattttgaaacttctct |
213 |
Q |
| |
|
|||||||||| ||||||||||||||| |
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|
| T |
22751194 |
tgccatcaacttgttttgaaacttctct |
22751221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 22727795 - 22727916
Alignment:
| Q |
106 |
ttcatttcccatccttgcagtttaaggatcctcatgttccttaaaatttcagatgtggtcttcattcttgtatcctttgactccatcaacttattttgaa |
205 |
Q |
| |
|
||||| |||||| |||| |||||||| |||||||||||| ||| ||| ||||| || | |||||||||| |||| || ||||||| |||||| ||||| |
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|
| T |
22727795 |
ttcatctcccatgcttgaagtttaagaatcctcatgttcattagaatctcagacgtcgccttcattcttttatctttgaactccattaacttaacttgaa |
22727894 |
T |
|
| Q |
206 |
acttctcttgcaatgatcccaa |
227 |
Q |
| |
|
|||||||||||| |||| |||| |
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|
| T |
22727895 |
acttctcttgcagtgatgccaa |
22727916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 22739188 - 22739072
Alignment:
| Q |
106 |
ttcatttcccatccttgcagtttaaggatcctcatgttccttaaaatttcagatgtggtcttcattcttgtatcctttgactccatcaacttattttgaa |
205 |
Q |
| |
|
||||| |||||| |||| |||||||| |||||||||||| ||| ||| ||||| || | |||||||||| |||| || | ||||| |||||| ||||| |
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|
| T |
22739188 |
ttcatctcccatgcttgaagtttaagaatcctcatgttcattagaatctcagacgtcgccttcattcttttatctttaaattccattaacttaccttgaa |
22739089 |
T |
|
| Q |
206 |
acttctcttgcaatgat |
222 |
Q |
| |
|
|||||||||||| |||| |
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|
| T |
22739088 |
acttctcttgcagtgat |
22739072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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