View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1924_low_1 (Length: 499)
Name: NF1924_low_1
Description: NF1924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1924_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 457; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 16 - 488
Target Start/End: Complemental strand, 16240447 - 16239975
Alignment:
| Q |
16 |
ataaggattgggagcaattcaagggtgatcatagtaacaaatacaatagtttttgttggccatattagtacatttcccataaggatttttgtagactctt |
115 |
Q |
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| T |
16240447 |
ataaggattgggagcaattcaagggtgatcatagtaacaaatacaatagtttttgttagccatattagtacatttcccataaggatttttgtagactctt |
16240348 |
T |
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| Q |
116 |
tctgcggaagtacactttgcatcgcaacagtttgaatcacaattagcgtcgcaaagtccataccctagactgcacattggtattccttgaattttagggg |
215 |
Q |
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| T |
16240347 |
tctgcggaagtacactttgcatcgcaacagtttgaatcacaattagcgtcgcaaagtccataccctagactgcacattggtattccttgaattttagggg |
16240248 |
T |
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| Q |
216 |
gtagtgacaaattgaaaaaacaagtgcataggttgtagtaacgacaatgtgaatcaccacttattgtaagctttctacaataacctttacaatccatcgt |
315 |
Q |
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| T |
16240247 |
gtagtgacaaattgaaaaaacaagtgcataggttgtagtaacgacaatgtgaatcaccacttattgtaagctttctacaataacctttacaatccatcgt |
16240148 |
T |
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| Q |
316 |
agaacaactacccacaatttttgcacatgtagctcccaccagtattgattgcactgtgctcccaatcaaattggggaagaaatattagtgagttttcgat |
415 |
Q |
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| T |
16240147 |
agcacaactacccacaatttttgcacatgtagctcccaccagtattgattgcactgtactcccaatcaaattggggaagaaatattagtgagttttcgat |
16240048 |
T |
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| Q |
416 |
ccaacaaccacggatatgctaatcggatctagcaagaccaggattgcttgcagtcaaaagtttgccaattcat |
488 |
Q |
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| T |
16240047 |
ccaacaaccacggatatgctaatcggatctagcaagaccaggattgcttgcagtcaaaagtttgccgattcat |
16239975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 379
Target Start/End: Complemental strand, 16264805 - 16264727
Alignment:
| Q |
301 |
tttacaatccatcgtagaacaactacccacaatttttgcacatgtagctcccaccagtattgattgcactgtgctccca |
379 |
Q |
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| T |
16264805 |
tttacaatccatcacagaacagctaccaacaattcttgggcatgtagcttctactagtattgattgcactatactccca |
16264727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 16267801 - 16267743
Alignment:
| Q |
139 |
gcaacagtttgaatcacaattagcgtcgcaaagtccataccctagactgcacattggta |
197 |
Q |
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| T |
16267801 |
gcaacagtttgaatcacaatcatcttcgcaaattccatacccaaaactgcaccttggta |
16267743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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