View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1924_low_10 (Length: 246)
Name: NF1924_low_10
Description: NF1924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1924_low_10 |
 | |
|
| [»] chr1 (6 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 29719614 - 29719369
Alignment:
| Q |
1 |
ttcaaggcaaatatttcaacctaagcaaaatataatattttttgttatatacacttagtaatttctacaatttaattgcagcacaaaagagtgttacagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29719614 |
ttcaaggcaaatatttcaacctaagcaaaatataatattttttgttatatacacttagtaatttctacaatttaattgcagcacaaaagagtgttacagg |
29719515 |
T |
|
| Q |
101 |
ccgaaactaaagagtctagaattttgttttaagtatcagttcaaggaggacaacaaccaattcagggaaatattttaagctaagctggcacacacaaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29719514 |
ccgaaactaaagagtctagaattttgttttaagtatcagttcaaggaggacaacaatcaattcagggaaatattttaagctaagctggcacacacaaact |
29719415 |
T |
|
| Q |
201 |
acctaacatcaaacaacattggaaaaatcaagatcattgaatcaat |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29719414 |
acctaacatcaaacaacattggaaaaatcaagatcattgaatcaat |
29719369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 29659651 - 29659551
Alignment:
| Q |
1 |
ttcaaggcaaatatttcaacctaagcaaaatataatattttttgttatatacacttagtaatttctacaatttaattgcagcacaaaagagtgttacagg |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||| || |||||||||| |||||||||||||||| ||| |
|
|
| T |
29659651 |
ttcaagtcaaatatttcaacctaagcaaaatataatattttttattatatttacttagtaatttatatgatttaattgctgcacaaaagagtgttatagg |
29659552 |
T |
|
| Q |
101 |
c |
101 |
Q |
| |
|
| |
|
|
| T |
29659551 |
c |
29659551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 29659482 - 29659416
Alignment:
| Q |
180 |
ctaagctggcacacacaaactacctaacatcaaacaacattggaaaaatcaagatcattgaatcaat |
246 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29659482 |
ctaagctagcacacacaaactacctaacatcaaacaacattggaaaaatcaagatcattgaatcaat |
29659416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 33160244 - 33160344
Alignment:
| Q |
2 |
tcaaggcaaatat-ttcaacctaagcaaaatataatattttttgttatatacacttagtaatttcta-caatttaattgcagcacaaaagagtgttacag |
99 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| || |||||||||||| ||||| |||| ||||| ||||| ||| | |||||||||||||||| || |
|
|
| T |
33160244 |
tcaaggcaaatatgttcaacctaagcaaaatatatta-tttttgttatattcacttggtaacttctataaatttcatttctgcacaaaagagtgttaaag |
33160342 |
T |
|
| Q |
100 |
gc |
101 |
Q |
| |
|
|| |
|
|
| T |
33160343 |
gc |
33160344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 8162295 - 8162378
Alignment:
| Q |
153 |
acaaccaattcagggaaatattttaagc----taagctggcacacacaaactacctaacatcaaacaacattggaaaaatcaag |
232 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||| ||| ||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
8162295 |
acaaccaattcagggaaatattttaagcagattcagcaatcactcacaaactacctaacatcaaacaacatcgaaaaaatcaag |
8162378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 19469158 - 19469113
Alignment:
| Q |
182 |
aagctggcacacacaaactacctaacatcaaacaacattggaaaaa |
227 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19469158 |
aagctagcacacacaaactacctaacatcaaataacattggaaaaa |
19469113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University