View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1924_low_14 (Length: 216)
Name: NF1924_low_14
Description: NF1924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1924_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 175406 - 175206
Alignment:
| Q |
1 |
caacaccactttccttcatctctggtatcgtgcttccaccactcactctttctcaaatatccttcaatccattgcctccaccgcttctcttgttttcctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
175406 |
caacaccactttccttcatctctggtatcgtgcttccaccactcactctttctcaaatatccttcaatccattgcctccaccgcttctctcgttttcctt |
175307 |
T |
|
| Q |
101 |
ctccgtcacttcgttgatcatttcactatttccctccctccctgtactcttgttaatcaagcctttgctgttgccgttggaaaggtcttggaaggttaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
175306 |
ctccgtcacttcgttgatcatttcactatttccctccctccctgtactcttgttaatcaagcctttgctgttgccgttggaaaggtcttggaaggttaca |
175207 |
T |
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| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
175206 |
t |
175206 |
T |
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