View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1924_low_2 (Length: 460)

Name: NF1924_low_2
Description: NF1924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1924_low_2
NF1924_low_2
[»] chr7 (37 HSPs)
chr7 (18-227)||(30215989-30216205)
chr7 (19-198)||(27521432-27521611)
chr7 (18-183)||(19277253-19277418)
chr7 (27-198)||(982918-983089)
chr7 (18-198)||(21326805-21326985)
chr7 (20-198)||(24527551-24527729)
chr7 (18-198)||(4501219-4501398)
chr7 (18-137)||(48539141-48539260)
chr7 (30-198)||(32584572-32584741)
chr7 (18-183)||(45613824-45613989)
chr7 (18-175)||(22197947-22198103)
chr7 (18-175)||(22239718-22239874)
chr7 (19-183)||(28517269-28517433)
chr7 (18-184)||(43856834-43857000)
chr7 (18-183)||(10905078-10905242)
chr7 (18-158)||(40726487-40726627)
chr7 (18-175)||(42295174-42295331)
chr7 (18-183)||(25186918-25187078)
chr7 (314-401)||(30215816-30215904)
chr7 (41-183)||(2904348-2904490)
chr7 (18-158)||(5825233-5825373)
chr7 (41-158)||(9281138-9281255)
chr7 (41-158)||(9292109-9292226)
chr7 (96-183)||(3676677-3676764)
chr7 (21-120)||(5972261-5972360)
chr7 (29-158)||(34067869-34067996)
chr7 (77-170)||(47251777-47251869)
chr7 (115-177)||(26770454-26770516)
chr7 (64-153)||(47679131-47679220)
chr7 (58-141)||(6634987-6635070)
chr7 (27-158)||(34772751-34772881)
chr7 (96-183)||(38839362-38839453)
chr7 (64-153)||(23793018-23793107)
chr7 (22-185)||(23037509-23037671)
chr7 (125-176)||(1249653-1249704)
chr7 (128-172)||(24566960-24567004)
chr7 (18-102)||(41117833-41117917)
[»] scaffold0490 (1 HSPs)
scaffold0490 (18-183)||(6294-6459)
[»] chr2 (30 HSPs)
chr2 (21-198)||(41867875-41868052)
chr2 (18-181)||(17344598-17344761)
chr2 (18-198)||(4413033-4413213)
chr2 (18-175)||(9685405-9685562)
chr2 (41-198)||(5532403-5532559)
chr2 (18-198)||(19161750-19161930)
chr2 (49-198)||(28224991-28225140)
chr2 (22-183)||(2888480-2888641)
chr2 (18-175)||(18744944-18745101)
chr2 (30-174)||(34814810-34814953)
chr2 (18-137)||(20142753-20142872)
chr2 (22-143)||(2886637-2886758)
chr2 (18-183)||(27502322-27502487)
chr2 (18-115)||(13413311-13413408)
chr2 (69-171)||(33612542-33612643)
chr2 (77-183)||(23484920-23485025)
chr2 (27-136)||(32029115-32029224)
chr2 (18-158)||(44686376-44686520)
chr2 (109-175)||(44720374-44720440)
chr2 (100-172)||(3968402-3968474)
chr2 (64-175)||(13147087-13147201)
chr2 (22-183)||(16351823-16351987)
chr2 (18-183)||(3825686-3825852)
chr2 (49-157)||(11921218-11921326)
chr2 (104-183)||(1296032-1296111)
chr2 (69-184)||(29808086-29808200)
chr2 (96-172)||(5679316-5679392)
chr2 (49-196)||(7760815-7760961)
chr2 (112-196)||(31584161-31584248)
chr2 (116-172)||(9200423-9200479)
[»] chr1 (29 HSPs)
chr1 (18-176)||(21472963-21473121)
chr1 (18-198)||(34644526-34644706)
chr1 (18-181)||(29169777-29169940)
chr1 (18-186)||(45659627-45659793)
chr1 (28-186)||(4861968-4862126)
chr1 (30-175)||(31737313-31737458)
chr1 (22-183)||(20259779-20259940)
chr1 (18-183)||(22346855-22347020)
chr1 (27-175)||(28041117-28041265)
chr1 (18-136)||(24177540-24177658)
chr1 (76-183)||(19035465-19035572)
chr1 (30-183)||(2764451-2764604)
chr1 (22-183)||(2898666-2898830)
chr1 (41-153)||(38731592-38731704)
chr1 (64-183)||(16500040-16500159)
chr1 (90-189)||(36486918-36487017)
chr1 (104-183)||(50161399-50161478)
chr1 (87-198)||(37200012-37200122)
chr1 (18-122)||(7213210-7213314)
chr1 (86-182)||(25375816-25375912)
chr1 (69-183)||(37932200-37932313)
chr1 (100-162)||(50314627-50314689)
chr1 (109-186)||(5438995-5439071)
chr1 (32-156)||(18616162-18616286)
chr1 (41-198)||(42919843-42919999)
chr1 (49-129)||(47459673-47459753)
chr1 (19-74)||(35387747-35387802)
chr1 (100-172)||(15584916-15584988)
chr1 (96-140)||(36777709-36777753)
[»] chr3 (28 HSPs)
chr3 (18-175)||(53785669-53785826)
chr3 (18-183)||(39583211-39583376)
chr3 (18-158)||(52741519-52741659)
chr3 (19-183)||(37132981-37133145)
chr3 (18-183)||(44198727-44198892)
chr3 (18-198)||(26772718-26772898)
chr3 (18-172)||(26856755-26856909)
chr3 (53-176)||(7900853-7900976)
chr3 (27-198)||(49017932-49018103)
chr3 (18-158)||(32546755-32546895)
chr3 (22-183)||(38978781-38978942)
chr3 (19-160)||(51234577-51234718)
chr3 (41-183)||(3443294-3443436)
chr3 (76-173)||(38670873-38670969)
chr3 (18-198)||(13582470-13582649)
chr3 (41-157)||(21552651-21552766)
chr3 (18-162)||(38146016-38146160)
chr3 (96-183)||(46940752-46940839)
chr3 (27-173)||(7502003-7502148)
chr3 (41-179)||(5338626-5338767)
chr3 (18-153)||(52411903-52412038)
chr3 (28-183)||(25324999-25325156)
chr3 (78-186)||(4473081-4473189)
chr3 (64-181)||(54508367-54508485)
chr3 (64-190)||(3376715-3376842)
chr3 (18-81)||(44796-44859)
chr3 (84-158)||(13764556-13764630)
chr3 (99-173)||(35484684-35484758)
[»] chr6 (24 HSPs)
chr6 (30-183)||(45659-45812)
chr6 (18-198)||(4206563-4206743)
chr6 (30-198)||(959553-959720)
chr6 (18-157)||(4165930-4166069)
chr6 (19-198)||(17249272-17249451)
chr6 (30-183)||(33220693-33220846)
chr6 (27-190)||(34415405-34415568)
chr6 (49-183)||(34304487-34304621)
chr6 (19-183)||(24016298-24016462)
chr6 (22-181)||(28625895-28626054)
chr6 (22-183)||(34554259-34554420)
chr6 (77-195)||(28543394-28543512)
chr6 (18-158)||(29338086-29338226)
chr6 (49-198)||(357684-357832)
chr6 (96-183)||(3714955-3715042)
chr6 (103-198)||(34168913-34169008)
chr6 (96-177)||(6225110-6225191)
chr6 (111-198)||(12401384-12401471)
chr6 (28-172)||(13398175-13398319)
chr6 (96-198)||(28008954-28009059)
chr6 (146-199)||(32115777-32115830)
chr6 (42-162)||(22985905-22986025)
chr6 (42-162)||(23802369-23802489)
chr6 (18-58)||(32115678-32115718)
[»] chr8 (29 HSPs)
chr8 (29-183)||(500199-500352)
chr8 (18-158)||(38815254-38815394)
chr8 (30-183)||(39434639-39434792)
chr8 (22-196)||(24124992-24125166)
chr8 (22-183)||(6592540-6592700)
chr8 (18-198)||(35739953-35740133)
chr8 (18-183)||(3187930-3188094)
chr8 (69-183)||(8619825-8619939)
chr8 (18-183)||(25021796-25021961)
chr8 (49-176)||(8882319-8882445)
chr8 (22-183)||(6618249-6618409)
chr8 (30-135)||(37514193-37514298)
chr8 (18-157)||(28196152-28196291)
chr8 (86-183)||(42922109-42922206)
chr8 (22-108)||(22589394-22589479)
chr8 (18-151)||(39671185-39671319)
chr8 (21-122)||(43823952-43824053)
chr8 (96-183)||(4073573-4073660)
chr8 (83-183)||(10189568-10189668)
chr8 (69-185)||(8540357-8540473)
chr8 (115-170)||(27422140-27422195)
chr8 (25-92)||(40223476-40223543)
chr8 (18-92)||(18804572-18804646)
chr8 (77-152)||(12320200-12320275)
chr8 (18-104)||(3821184-3821270)
chr8 (27-128)||(3863286-3863387)
chr8 (97-162)||(10556296-10556361)
chr8 (95-151)||(10950673-10950729)
chr8 (95-151)||(10958678-10958734)
[»] chr5 (31 HSPs)
chr5 (19-162)||(42921658-42921801)
chr5 (27-183)||(37873620-37873776)
chr5 (18-198)||(8100512-8100692)
chr5 (18-158)||(38875598-38875738)
chr5 (18-176)||(13166899-13167057)
chr5 (18-183)||(35310408-35310573)
chr5 (55-183)||(27336690-27336818)
chr5 (18-198)||(32269764-32269944)
chr5 (18-183)||(15292008-15292172)
chr5 (30-183)||(25663014-25663167)
chr5 (64-183)||(33692037-33692156)
chr5 (41-183)||(26212565-26212707)
chr5 (49-183)||(43129525-43129659)
chr5 (69-182)||(35455967-35456080)
chr5 (53-198)||(14423677-14423818)
chr5 (18-133)||(22188687-22188802)
chr5 (50-173)||(34335329-34335452)
chr5 (87-198)||(3114130-3114241)
chr5 (26-137)||(14723272-14723383)
chr5 (85-184)||(32230488-32230587)
chr5 (97-183)||(43115440-43115525)
chr5 (18-142)||(430562-430686)
chr5 (96-156)||(9829361-9829421)
chr5 (111-176)||(8858969-8859034)
chr5 (96-170)||(26577395-26577469)
chr5 (116-157)||(7143764-7143805)
chr5 (99-170)||(14436541-14436609)
chr5 (96-172)||(13307394-13307470)
chr5 (70-130)||(41343473-41343533)
chr5 (18-59)||(2566201-2566242)
chr5 (18-54)||(23023555-23023591)
[»] scaffold0009 (1 HSPs)
scaffold0009 (18-198)||(103066-103245)
[»] chr4 (35 HSPs)
chr4 (18-183)||(30940721-30940879)
chr4 (18-183)||(600674-600839)
chr4 (54-198)||(53619582-53619726)
chr4 (18-183)||(34107676-34107843)
chr4 (19-183)||(56462089-56462252)
chr4 (27-198)||(132354-132525)
chr4 (18-198)||(26521448-26521628)
chr4 (18-183)||(50000907-50001073)
chr4 (41-150)||(50483211-50483320)
chr4 (49-198)||(31847078-31847227)
chr4 (19-158)||(53170474-53170607)
chr4 (49-144)||(7536592-7536687)
chr4 (64-198)||(12918339-12918473)
chr4 (101-182)||(23255747-23255828)
chr4 (21-186)||(50462925-50463090)
chr4 (79-183)||(55933444-55933548)
chr4 (18-137)||(3329956-3330075)
chr4 (22-165)||(25504259-25504402)
chr4 (94-183)||(48656892-48656981)
chr4 (18-157)||(6865828-6865967)
chr4 (30-158)||(43849355-43849483)
chr4 (85-183)||(16957569-16957667)
chr4 (41-137)||(53098404-53098500)
chr4 (18-105)||(4419223-4419310)
chr4 (27-162)||(54190859-54190989)
chr4 (49-183)||(46440871-46441005)
chr4 (18-89)||(16955420-16955491)
chr4 (96-162)||(24719972-24720039)
chr4 (77-183)||(12053432-12053538)
chr4 (101-158)||(34536939-34536996)
chr4 (27-127)||(38535607-38535707)
chr4 (41-122)||(747812-747893)
chr4 (64-136)||(11562904-11562976)
chr4 (110-198)||(45386028-45386116)
chr4 (116-160)||(45760839-45760883)
[»] scaffold0148 (1 HSPs)
scaffold0148 (18-198)||(33210-33389)
[»] scaffold0186 (1 HSPs)
scaffold0186 (27-196)||(10330-10502)
[»] scaffold0470 (1 HSPs)
scaffold0470 (22-183)||(7567-7727)
[»] scaffold0110 (1 HSPs)
scaffold0110 (86-183)||(47521-47618)
[»] scaffold1768 (1 HSPs)
scaffold1768 (18-198)||(151-331)
[»] scaffold0031 (1 HSPs)
scaffold0031 (94-195)||(49447-49548)
[»] scaffold0493 (1 HSPs)
scaffold0493 (83-156)||(8525-8598)
[»] scaffold0119 (1 HSPs)
scaffold0119 (115-183)||(16191-16259)
[»] scaffold0224 (1 HSPs)
scaffold0224 (41-198)||(18332-18488)


Alignment Details
Target: chr7 (Bit Score: 135; Significance: 4e-70; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 30216205 - 30215989
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||||||||||||| ||| ||||||| |||||||| || ||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||    
T  30216205 ctaggagatatgacattgctatgcatgaccatttgaactttatgtggaagatcaacaaactctgatgctaggaaaccgaaagtgtcaaaagcaaatggta 30216106  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtcct-------aagcattccataa 210  Q
    ||||| ||||||||||||||||||||| |||||||| |||||||||||| ||||||||| ||||||||||||||||| ||       |||||||||||||    
T  30216105 taaaaacatgttgattgtcaaaacacgctttctcatatttgaccattttgcttgacgcagcttttaaggatgcttgttctactgtacaagcattccataa 30216006  T
Q  211 agagatatatcgaattg 227  Q
    |||||||||||||||||    
T  30216005 agagatatatcgaattg 30215989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 27521432 - 27521611
Alignment:
Q  19 taggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtat 118  Q
    ||||||| ||||||||| ||| ||||||||||||||||||| || |||| |||||| ||||||||||||||||||| ||||||||||||  |||| ||||    
T  27521432 taggagacatgacattgttatgcatgaccttttgaactctatgtagaaggtcaacaacctctgatgctaggaaaccaaaagtgtcaaaagtaaattgtat 27521531  T
Q  119 aaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    ||| ||||||||||||||| |||||||||||||||||||||||| |||  || ||||||||||||||| ||| |||||||    
T  27521532 aaatgcatgttgattgtcagaacacgttttctcatgtttgaccactttgtttaacgcaacttttaagggtgcatgtccta 27521611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 19277253 - 19277418
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||| ||| ||||||||||||||||||| || |||| |||||| |||||| ||||||||||||||||||||||||| |||||||||    
T  19277253 ctaggagacatgacattgctatgcatgaccttttgaactctatgtagaaggtcaacaacctctggtgctaggaaaccgaaagtgtcaaaagcaaatggta 19277352  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    |||||||||||||||||||| |||||| ||||||||||||| | | ||| ||||||||| ||||||    
T  19277353 taaaagcatgttgattgtcagaacacgctttctcatgtttggctactttgcttgacgcagctttta 19277418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 27 - 198
Target Start/End: Original strand, 982918 - 983089
Alignment:
Q  27 atgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcat 126  Q
    ||||||||||||| ||||||||||||||||||| || ||||  ||||| |||||| |||||| ||||||||||| |||||| ||||||||||||||||||    
T  982918 atgacattgatatgcatgaccttttgaactctatgtagaaggccaacaacctctggtgctagaaaaccgaaagtatcaaaagcaaatggtataaaagcat 983017  T
Q  127 gttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    ||||||||||| |||||| ||||||||||||| ||| ||| ||||||||| |||||| || ||| |||||||    
T  983018 gttgattgtcagaacacgatttctcatgtttggccactttgcttgacgcagcttttatggctgcctgtccta 983089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 21326985 - 21326805
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| || |||||| ||| ||||||||||||||||||| ||  ||| |||||| |||||| |||||||||| |||||||||||||| |||||||||    
T  21326985 ctaggagacataacattgctatgcatgaccttttgaactctatgtaaaaggtcaacagcctctggtgctaggaaatcgaaagtgtcaaaagcaaatggta 21326886  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    |||||||||||||||||||| |||||| ||||||||||||| ||| ||| ||||||||  |||||| || || ||||||||    
T  21326885 taaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcggcttttagggctgtttgtccta 21326805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 24527551 - 24527729
Alignment:
Q  20 aggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtata 119  Q
    |||||| ||||||||| ||| ||||||||||||||||||| || |||| |||||  |||||  ||||||||||| ||||||||||||| |||||||||||    
T  24527551 aggagaaatgacattgctatgcatgaccttttgaactctatgtagaaggtcaaccgcctctcgtgctaggaaactgaaagtgtcaaaagcaaatggtata 24527650  T
Q  120 aaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    |||||||||||||||||| |||||||||||||||||||  ||| |||||||||| |  |||||| || ||| |||||||    
T  24527651 aaagcatgttgattgtcagaacacgttttctcatgttttcccactttacttgacactgcttttagggctgcctgtccta 24527729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 4501219 - 4501398
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||| ||| ||||| ||||||||||||| || |||| |||||| |||||| |||||| ||||| |||||||||||| |||||  ||    
T  4501219 ctaggagacatgacattgctatgcatgaacttttgaactctatgtagaaggtcaacaacctctggtgctagaaaacc-aaagtgtcaaaagcaaattata 4501317  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    |||||||||||||||||||| |||||| ||||||||||||| ||| |||  |||||||| |||||| || || ||||||||    
T  4501318 taaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgtttgacgcagcttttagggttgtttgtccta 4501398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 48539141 - 48539260
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||| ||| |||||||||||| |||||| || || |||||||| |||||| |||||| |||||||||||||||||| |||||||||    
T  48539141 ctaggagacatgacattgctatgcatgaccttttggactctatgtagacgatcaacagcctctggtgctagaaaaccgaaagtgtcaaaagcaaatggta 48539240  T
Q  118 taaaagcatgttgattgtca 137  Q
    ||||||||||||||||||||    
T  48539241 taaaagcatgttgattgtca 48539260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 30 - 198
Target Start/End: Original strand, 32584572 - 32584741
Alignment:
Q  30 acattgatatccatgaccttttg-aactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgt 128  Q
    |||||||||| ||||| |||||| |||||||  | |||| |||||| |||||| |||||||||||  |||||||||||| |||||||| ||||||||| |    
T  32584572 acattgatatgcatgatcttttggaactctatctagaaggtcaacaacctctggtgctaggaaacataaagtgtcaaaagcaaatggtgtaaaagcatct 32584671  T
Q  129 tgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    ||||||||| |||||||||||||||||||||||| |||  |||| |||| ||||| || ||| |||||||    
T  32584672 tgattgtcagaacacgttttctcatgtttgaccactttgtttgatgcaatttttagggttgcatgtccta 32584741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 45613989 - 45613824
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    ||||||||| |||||||| ||| ||||| ||||||||||||| || ||||   |||| |||||| |||| |||||||||||||||||||| |||||||||    
T  45613989 ctaggagatttgacattgttatgcatgaacttttgaactctatgtagaaggctaacagcctctggtgcttggaaaccgaaagtgtcaaaatcaaatggta 45613890  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    ||||| |||||||||||||| |||||  |||| | ||||||  ||  |||||||||||||||||||    
T  45613889 taaaaacatgttgattgtcagaacacactttcccgtgtttggtcaccttacttgacgcaactttta 45613824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 22197947 - 22198103
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||| ||| |||| || ||||||||||||||| || |||| |||||| |||||||||||||||||||||||||| ||||| |||||||||    
T  22197947 ctaggagacatgacgttgctatc-ataaccttttgaactctatgtagaaggtcaacaacctctgatgctaggaaaccgaaagtgacaaaagcaaatggta 22198045  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgc 175  Q
    ||||| ||||||||||||   |||||  |||||||||||||  || ||| ||||||||    
T  22198046 taaaaacatgttgattgttggaacacactttctcatgtttggtcactttgcttgacgc 22198103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 22239874 - 22239718
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||| ||| |||| || ||||||||||||||| || |||| |||||| |||||||||||||||||||||||||| ||||| |||||||||    
T  22239874 ctaggagacatgacgttgctatc-ataaccttttgaactctatgtagaaggtcaacaacctctgatgctaggaaaccgaaagtgacaaaagcaaatggta 22239776  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgc 175  Q
    ||||| ||||||||||||   |||||  |||||||||||||  || ||| ||||||||    
T  22239775 taaaaacatgttgattgttggaacacactttctcatgtttggtcactttgcttgacgc 22239718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 28517433 - 28517269
Alignment:
Q  19 taggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtat 118  Q
    ||||||| || |||||| ||| ||| ||| |||| |||||| || |||| |||||   |||||||||||||||  | |||||||||||| ||||||||||    
T  28517433 taggagacataacattgttatgcataaccctttggactctatgtagaaggtcaactgtctctgatgctaggaagtcaaaagtgtcaaaagcaaatggtat 28517334  T
Q  119 aaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    |||| ||||||||||||| ||||||| ||||||||||||| ||| ||| ||||||||| ||||||    
T  28517333 aaaaacatgttgattgtctaaacacgctttctcatgtttggccactttgcttgacgcagctttta 28517269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 43856834 - 43857000
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||  ||||||||| | | ||||||| ||||||||||| || |||| |||||| |||||| || ||||||||| ||| |||||||| ||||| |||    
T  43856834 ctaggagtcatgacattgttgtgcatgaccctttgaactctatgtagaaggtcaacaacctctggtgttaggaaaccaaaaatgtcaaaagcaaattgta 43856933  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaa 184  Q
    |||| |||||||||||||||||||||| |||||||||| |  ||| |||  |||||||| |||||||    
T  43856934 taaacgcatgttgattgtcaaaacacgctttctcatgtctagccactttgattgacgcatcttttaa 43857000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 10905078 - 10905242
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||| ||| |||| |  ||||||||||| || |||| ||||||  ||||| ||||||| |||| |||||||||||| |||||||||    
T  10905078 ctaggagacatgacattgttatgcatggctctttgaactctatgtagaaggtcaacatactctggtgctaggcaaccaaaagtgtcaaaagcaaatggta 10905177  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    | |||||||||||| ||||| ||||| ||||||||| |||| ||| ||| ||||||||| ||||||    
T  10905178 t-aaagcatgttgagtgtcagaacactttttctcatatttggccactttgcttgacgcagctttta 10905242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 40726627 - 40726487
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||  ||||| ||| ||| ||| |||| |||||| || |||| |||||| |||||||||||| ||| |||||||||||||||||||||||||    
T  40726627 ctaggagacatagcattgttatgcataaccctttggactctatgtagaaggtcaacaacctctgatgctatgaagccgaaagtgtcaaaaacaaatggta 40726528  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttg 158  Q
    ||||| |||||||||||||| ||||| |||| | |||||||    
T  40726527 taaaaacatgttgattgtcagaacacattttattatgtttg 40726487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 42295331 - 42295174
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| |||||| || ||| |||||  |||||||| ||| || |||| |||||| || ||| || ||||||||||||||| | ||||||||||||||    
T  42295331 ctaggagacatgacaatgttatgcatgatattttgaacgctatgtagaaggtcaacaacccctggtgttaggaaaccgaaagtataaaaaacaaatggta 42295232  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgc 175  Q
    ||||| |||||||||||||| || | | ||||| ||||||| ||||||| ||||||||    
T  42295231 taaaaacatgttgattgtcagaagaagctttcttatgtttggccattttgcttgacgc 42295174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 25187078 - 25186918
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||| ||| |||||||||||||||||||  | |||| |||||| |||||  || | |||||||||     |||||| |||||||||    
T  25187078 ctaggagacatgacattgctatgcatgaccttttgaactctatatagaaggtcaacaacctctagtgttcggaaaccga-----tcaaaagcaaatggta 25186984  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
     |||| |||||||||| ||  |||||| ||||||||||| ||||| |||||||||| |||||||||    
T  25186983 gaaaaacatgttgattatcggaacacgctttctcatgttagaccactttacttgacacaactttta 25186918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 314 - 401
Target Start/End: Complemental strand, 30215904 - 30215816
Alignment:
Q  314 tatcaaattgtc-cataaatcatagctcaactaacaaaaatattaaaattgttactttgaacttcgttatcggattcgaactccaacac 401  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||| || |||||||||| ||||    
T  30215904 tatcaaattgtctcataagtcatagctcaactaacaaaaatattaaaattgttagtttgaacttcattattgggttcgaactccgacac 30215816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 41 - 183
Target Start/End: Original strand, 2904348 - 2904490
Alignment:
Q  41 catgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaa 140  Q
    ||||||| ||| |||| ||||| |||| |||||| |||||  ||||||||| || ||  ||||| ||||||||| ||||||| |||||||||||||  ||    
T  2904348 catgaccctttaaactttacgtagaaggtcaacaacctctagtgctaggaagccaaacatgtcacaaacaaatgatataaaatcatgttgattgtcggaa 2904447  T
Q  141 cacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    || | ||||||||||||||| ||||| ||||||| ||||||||    
T  2904448 catgctttctcatgtttgactattttgcttgacgtaactttta 2904490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 5825233 - 5825373
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| || |||||| ||| ||| ||| |||  |||||| || |||| |||||| |||||| ||||||||  |||||||||||||||  ||||||||    
T  5825233 ctaggagacataacattgctatgcataaccctttcgactctatgtagaaggtcaacaacctctggtgctaggatgccgaaagtgtcaaaagtaaatggta 5825332  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttg 158  Q
    ||||| |||||||||||||| ||||||  || |||||||||    
T  5825333 taaaaacatgttgattgtcataacacgcattgtcatgtttg 5825373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 158
Target Start/End: Complemental strand, 9281255 - 9281138
Alignment:
Q  41 catgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaa 140  Q
    ||||||| ||||||||||| || |||| |||||| | |||| ||||||||| |  ||| |||||||  ||||| ||||||||||||||||||||| | ||    
T  9281255 catgaccctttgaactctatgtagaaggtcaacaacatctggtgctaggaagcaaaaaatgtcaaatccaaatagtataaaagcatgttgattgttagaa 9281156  T
Q  141 cacgttttctcatgtttg 158  Q
    |||| |||||||||||||    
T  9281155 cacgctttctcatgtttg 9281138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 158
Target Start/End: Complemental strand, 9292226 - 9292109
Alignment:
Q  41 catgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaa 140  Q
    ||||||| ||||||||||| || |||| |||||| | |||| ||||||||| |  ||| |||||||  ||||| ||||||||||||||||||||| | ||    
T  9292226 catgaccctttgaactctatgtagaaggtcaacaacatctggtgctaggaagcaaaaaatgtcaaatccaaatagtataaaagcatgttgattgttagaa 9292127  T
Q  141 cacgttttctcatgtttg 158  Q
    |||| |||||||||||||    
T  9292126 cacgctttctcatgtttg 9292109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 3676677 - 3676764
Alignment:
Q  96 aaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    |||||||||||| |||||||||||||||||| ||||| || | |||||| ||||| ||||||||||| ||| ||||||||| ||||||    
T  3676677 aaagtgtcaaaagcaaatggtataaaagcatattgatagtaagaacacgctttctgatgtttgaccactttgcttgacgcagctttta 3676764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 5972360 - 5972261
Alignment:
Q  21 ggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataa 120  Q
    ||||| ||||||||  ||| |||||| |||||||||||| || |||| |||||| |||||||| |||| |||  |||| |||||||||||||||||||||    
T  5972360 ggagaaatgacattactatgcatgacattttgaactctatgtagaaggtcaacaacctctgatactagaaaaatgaaaatgtcaaaaacaaatggtataa 5972261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 158
Target Start/End: Complemental strand, 34067996 - 34067869
Alignment:
Q  29 gacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgt 128  Q
    ||||||||||| ||||||| ||| |||| | |||  |||||| ||| ||| || | |||||||||| ||||||||||| |||||||| ||| ||  ||||    
T  34067996 gacattgatatgcatgacccttt-aacttttcgtataagatccacaacctttggtactaggaaaccaaaagtgtcaaatacaaatggcatagaaa-atgt 34067899  T
Q  129 tgattgtcaaaacacgttttctcatgtttg 158  Q
    |||||||||||||||  |||||||||||||    
T  34067898 tgattgtcaaaacacactttctcatgtttg 34067869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 170
Target Start/End: Complemental strand, 47251869 - 47251777
Alignment:
Q  77 ctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttactt 170  Q
    |||||||||||||||  ||||| ||||||||||||||  ||||||||||||  |||||| | |||| |||||||||| |||||| |||||||||    
T  47251869 ctctgatgctaggaagtcgaaaatgtcaaaaacaaatt-tataaaagcatgaggattgtgagaacatgttttctcatatttgactattttactt 47251777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 26770454 - 26770516
Alignment:
Q  115 gtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaa 177  Q
    |||||||||||| | |||||||| ||||||||||||||||||| |||| |||| |||||||||    
T  26770454 gtataaaagcatatagattgtcagaacacgttttctcatgttttaccactttatttgacgcaa 26770516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 47679131 - 47679220
Alignment:
Q  64 gaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcat 153  Q
    |||| |||||| ||| ||||||||||||||||||| |||||||  ||||| ||||||||| || |||||||| | |||||  ||||||||    
T  47679131 gaaggtcaacaacctgtgatgctaggaaaccgaaaatgtcaaacgcaaatagtataaaagtatattgattgtgagaacacactttctcat 47679220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 6635070 - 6634987
Alignment:
Q  58 tacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaac 141  Q
    ||||| |||| |||||| ||||||||||||  ||| ||||| |||||||| |||||| |||||||  ||||||||||| |||||    
T  6635070 tacgtagaaggtcaacaacctctgatgctaaaaaatcgaaactgtcaaaagcaaatgatataaaaatatgttgattgttaaaac 6634987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 34772751 - 34772881
Alignment:
Q  27 atgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcat 126  Q
    ||||||||||||| |||||| ||||||| | || || |||| |||||| ||||| || ||| ||||  |||||| |||||| |||||||||||||| |||    
T  34772751 atgacattgatatgcatgactttttgaagtttatgtagaaggtcaacaacctctaat-ctaagaaattgaaagtttcaaaagcaaatggtataaaaacat 34772849  T
Q  127 gttgattgtcaaaacacgttttctcatgtttg 158  Q
     || ||||||  |||||  |||||||| ||||    
T  34772850 attaattgtccgaacacactttctcatatttg 34772881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 38839362 - 38839453
Alignment:
Q  96 aaagtgtcaaaaacaaatggtataaaa----gcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    |||||||||||| |||||  |||||||    |||||||||||| || |||| | ||||||||||||||| |||||| || ||||||||||||    
T  38839362 aaagtgtcaaaagcaaattatataaaaacatgcatgttgattgacataacatgctttctcatgtttgacgattttattttacgcaactttta 38839453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 23793018 - 23793107
Alignment:
Q  64 gaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcat 153  Q
    |||| |||||| ||| || ||||| |||| | ||||||||||| | || || |||| ||||||||||||||||||||||  |||||||||    
T  23793018 gaaggtcaacaacctgtggtgctaagaaaacaaaagtgtcaaacataattgatatagaagcatgttgattgtcaaaacatattttctcat 23793107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 23037509 - 23037671
Alignment:
Q  22 gagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaa 121  Q
    |||| ||||||||| ||| ||| ||| ||||||| |||||| || | |||||| ||||||| | ||| |||   ||||||||||||  ||||| ||||||    
T  23037509 gagaaatgacattgctatgcataaccctttgaaccctacgtagatggtcaacaacctctgacgttag-aaattaaaagtgtcaaaag-aaatgatataaa 23037606  T
Q  122 agcatgttgattgtc-aaaacacgttttctcatgtttgaccattttacttgacgcaacttttaag 185  Q
    | |||||||||| |  |||||| |||||||||| ||| || | |||  |||||||||||||||||    
T  23037607 aacatgttgattatataaaacatgttttctcatatttaactactttgtttgacgcaacttttaag 23037671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 176
Target Start/End: Original strand, 1249653 - 1249704
Alignment:
Q  125 atgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgca 176  Q
    |||| |||| |||||||||| ||||||||||||||||| |||| ||||||||    
T  1249653 atgtggattatcaaaacacgctttctcatgtttgaccactttatttgacgca 1249704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 24567004 - 24566960
Alignment:
Q  128 ttgattgtcaaaacacgttttctcatgtttgaccattttacttga 172  Q
    ||||||||| ||||||  ||||||||||||||||| |||||||||    
T  24567004 ttgattgtctaaacaccctttctcatgtttgaccactttacttga 24566960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 41117917 - 41117833
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgt 102  Q
    |||||| | ||||||||| ||| ||||| ||||| ||||||| || |||| | |||| | |||| || |||||||||||||||||    
T  41117917 ctaggaaacatgacattgctatgcatgatcttttaaactctatgtagaaggttaacaacatctggtgttaggaaaccgaaagtgt 41117833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 6294 - 6459
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||| ||| ||||||||||||||||||| || |||| |||||| |||||| ||||||||||| ||||||||||||| |||||||||    
T  6294 ctaggagacatgacattgctatgcatgaccttttgaactctatgtagaaggtcaacagcctctggtgctaggaaactgaaagtgtcaaaagcaaatggta 6393  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    || ||||||||||||||||| |||||| ||||||||||||| ||| ||||||||||||||||||||    
T  6394 tagaagcatgttgattgtcagaacacgctttctcatgtttggccactttacttgacgcaactttta 6459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 7e-53; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 21 - 198
Target Start/End: Complemental strand, 41868052 - 41867875
Alignment:
Q  21 ggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataa 120  Q
    ||||| ||||||||| ||| ||||||||||||||||||| || |||| |||||| |||||| ||||||||| ||||||||||||||| ||||||||||||    
T  41868052 ggagacatgacattgttatgcatgaccttttgaactctatgtagaaggtcaacagcctctggtgctaggaacccgaaagtgtcaaaagcaaatggtataa 41867953  T
Q  121 aagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    ||||||||||||||||| |||| | ||||||||||||||||| ||| ||||||||| ||||||||| ||| |||||||    
T  41867952 aagcatgttgattgtcagaacatgctttctcatgtttgaccactttgcttgacgcagcttttaaggctgcctgtccta 41867875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 17344598 - 17344761
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||| ||| ||||||||||||||||||| || |||| |||||| ||| || ||||||||||| ||||||||||||| |||||||||    
T  17344598 ctaggagacatgacattgttatgcatgaccttttgaactctatgtagaaggtcaacagcctatggtgctaggaaactgaaagtgtcaaaagcaaatggta 17344697  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttt 181  Q
    |||||||||||||||||| ||||||||||||||| |||||| |||  |||||||||||| ||||    
T  17344698 taaaagcatgttgattgtgaaaacacgttttctcgtgtttggccaccttacttgacgcagcttt 17344761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 4413213 - 4413033
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||| ||| ||| ||||||||||||||| ||| || |||| ||||||  ||||| ||||||||||||||||||||||||| |||||||||    
T  4413213 ctaggagacatgactttgctatgcatgaccttttgaaccctatgtagaaggtcaacaatctctggtgctaggaaaccgaaagtgtcaaaagcaaatggta 4413114  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    |||||||||||||||||||| |||||| ||||||||||||| ||| ||| |||||| || |||||| || ||| |||||||    
T  4413113 taaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacacagcttttagggttgcctgtccta 4413033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 9685562 - 9685405
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||| |||||||||||||||||||||||  | |||| || ||| |||||  |||||| ||| | |||||||||||| |||||||||    
T  9685562 ctaggagacatgacattgctatccatgaccttttgaactctatatagaaggtccacagcctctagtgctagaaaatcaaaagtgtcaaaagcaaatggta 9685463  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgc 175  Q
    |||||||||||||||||||| |||||| ||| ||||||||| ||| ||| ||||||||    
T  9685462 taaaagcatgttgattgtcagaacacgctttttcatgtttggccactttgcttgacgc 9685405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 5532403 - 5532559
Alignment:
Q  41 catgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaa 140  Q
    ||||||| ||||||||||| || |||| |||||| ||| || ||||||||| |  ||||||||||||  |||| ||||||||||||||||||||||| ||    
T  5532403 catgaccctttgaactctatgtagaagctcaacaacctatggtgctaggaagct-aaagtgtcaaaagtaaatagtataaaagcatgttgattgtcacaa 5532501  T
Q  141 cacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    |||||||||||||||||||||| ||| ||||||||| |||||| || ||| |||||||    
T  5532502 cacgttttctcatgtttgaccactttgcttgacgcagcttttagggctgcatgtccta 5532559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 19161930 - 19161750
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||||||| ||||||||||||||||||| ||  ||| | | || |||||  || ||  |||||||||||||||||| |||||||||    
T  19161930 ctaggagacatgacattgatatgcatgaccttttgaactctatgtaaaaggtaagcagcctctagtgttacaaaaccgaaagtgtcaaaagcaaatggta 19161831  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    ||||| |||||||||||||| |||||| ||| ||||||||| ||| ||| |||||||||  ||||| |||||  |||||||    
T  19161830 taaaaacatgttgattgtcagaacacgctttttcatgtttgcccacttttcttgacgcagattttagggatgtatgtccta 19161750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 49 - 198
Target Start/End: Original strand, 28224991 - 28225140
Alignment:
Q  49 tttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgtttt 148  Q
    |||| |||||| || |||| |||||| ||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||| || ||| |||    
T  28224991 tttggactctatgtagaaggtcaacaacctctgaagctaggaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaatacgcttt 28225090  T
Q  149 ctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    ||||| ||||  || ||| ||||||||| ||||||| | || ||||||||    
T  28225091 ctcatatttggtcactttgcttgacgcagcttttaaagttgtttgtccta 28225140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 22 - 183
Target Start/End: Original strand, 2888480 - 2888641
Alignment:
Q  22 gagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaa 121  Q
    |||||||||||||| | | |||||| ||||||||  |  || |||| |||||| |||||  || |||||| || ||||||||| |||| |||||||||||    
T  2888480 gagatatgacattgttgtgcatgacattttgaaccttgtgtagaaggtcaacaacctcttgtgttaggaagccaaaagtgtcataaacgaatggtataaa 2888579  T
Q  122 agcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    | |||||||||||||| |||||||||||||||||||| ||| ||| || |||||||||||||    
T  2888580 aacatgttgattgtcagaacacgttttctcatgtttgtccactttgctagacgcaactttta 2888641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 18745101 - 18744944
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||| ||||||||||| ||| ||||| ||||||||||||| || ||||  ||||| ||| || |||||| ||| ||||| |||||||| |||||||||    
T  18745101 ctaggaaatatgacattgctatgcatgatcttttgaactctatgtagaaggccaacagcctatggtgctagaaaatcgaaaatgtcaaaagcaaatggta 18745002  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgc 175  Q
    |||||| ||||||||||||| |||||| |||||| |||||| |||  | |||||||||    
T  18745001 taaaagtatgttgattgtcagaacacgctttctcgtgtttggccacctaacttgacgc 18744944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 30 - 174
Target Start/End: Complemental strand, 34814953 - 34814810
Alignment:
Q  30 acattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgtt 129  Q
    |||||| ||| ||||||| ||||||||||| || |||| ||||||  ||||| || |||||| ||||||||||| ||| |||||||||||||||||| ||    
T  34814953 acattgttatgcatgaccatttgaactctatgtagaaggtcaacagtctctggtgttaggaa-ccgaaagtgtcgaaagcaaatggtataaaagcatatt 34814855  T
Q  130 gattgtcaaaacacgttttctcatgtttgaccattttacttgacg 174  Q
    |||||||| |||||| |||||||||||||| || |||| ||||||    
T  34814854 gattgtcagaacacgctttctcatgtttgatcactttatttgacg 34814810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 20142872 - 20142753
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||| |||  |||||||||||||||||| ||  ||| |||||| ||| ||||||||| ||||| ||||||||||||  ||||||||    
T  20142872 ctaggagacatgacattgttatgtatgaccttttgaactctatgtataaggtcaacaacctttgatgctagaaaaccaaaagtgtcaaaagaaaatggta 20142773  T
Q  118 taaaagcatgttgattgtca 137  Q
    ||||||||||||||||||||    
T  20142772 taaaagcatgttgattgtca 20142753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 2886758 - 2886637
Alignment:
Q  22 gagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaa 121  Q
    ||||||||| |||| ||| ||||  ||||||||||||| ||  |||||||||| ||||||||||| ||||||||||| | ||||||||||||| ||||||    
T  2886758 gagatatgatattgctatgcatgctcttttgaactctatgtaaaagatcaacagcctctgatgcttggaaaccgaaaatatcaaaaacaaatgatataaa 2886659  T
Q  122 agcatgttgattgtcaaaacac 143  Q
    | |||||||||||||| |||||    
T  2886658 aacatgttgattgtcagaacac 2886637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 27502322 - 27502487
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| |||| |||| ||| ||| ||| |||| | |||| || |||| ||||||   | ||||||||||||  |||||||||||||||  ||| |||    
T  27502322 ctaggagacatgatattgctatgcataaccctttggattctatgtagaaggtcaacagtatatgatgctaggaagtcgaaagtgtcaaaaagcaattgta 27502421  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    ||||||||||||| |||||  |||||||||||||||||||||||| ||| ||||||||| ||||||    
T  27502422 taaaagcatgttgtttgtcggaacacgttttctcatgtttgaccactttgcttgacgcagctttta 27502487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 13413311 - 13413408
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatgg 115  Q
    |||||||| ||||||||| ||| ||||||||||||||||||| || |||| |||||| |||||| |||| | ||||||||||||||||||||||||||    
T  13413311 ctaggagacatgacattgttatgcatgaccttttgaactctatgtagaaggtcaacagcctctgctgcttgaaaaccgaaagtgtcaaaaacaaatgg 13413408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 69 - 171
Target Start/End: Complemental strand, 33612643 - 33612542
Alignment:
Q  69 tcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttac 168  Q
    |||||| |||| | || |||||| || ||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||| |    
T  33612643 tcaacaacctccggtgttaggaagccaaaagtgtcaaatacaaattgtataaaatcatgttgattgtcaaaacacgttttctcatgttt-accattttgc 33612545  T
Q  169 ttg 171  Q
    |||    
T  33612544 ttg 33612542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 23485025 - 23484920
Alignment:
Q  77 ctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgca 176  Q
    ||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||| | |||||||| |||| ||| |||  |||||| |    
T  23485025 ctctggtgctaggaaacagaa-gtgtcaaaaacaaatggtataaaagcatgttgattgtcagaacatgctttctcatatttggccactttgtttgacgta 23484927  T
Q  177 actttta 183  Q
     ||||||    
T  23484926 gctttta 23484920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 27 - 136
Target Start/End: Complemental strand, 32029224 - 32029115
Alignment:
Q  27 atgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcat 126  Q
    ||||||||| |||  |||||  ||||||||||| || |||| |||||| ||||||| | | |||| | |||||||||||||||||||| ||| |||||||    
T  32029224 atgacattgttatggatgactctttgaactctatgtagaaggtcaacagcctctgaagttgggaagctgaaagtgtcaaaaacaaatgatatgaaagcat 32029125  T
Q  127 gttgattgtc 136  Q
    ||||||||||    
T  32029124 gttgattgtc 32029115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 44686376 - 44686520
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| || |||||| ||| ||| ||| |||| | |||| || |||| ||||||  ||||||||||||||| ||||||||||||||| | ||   ||    
T  44686376 ctaggagacataacattgctatgcataaccctttggaatctatgtagaaggtcaacaaactctgatgctaggaagccgaaagtgtcaaaagcgaacaata 44686475  T
Q  118 taaaagcatg----ttgattgtcaaaacacgttttctcatgtttg 158  Q
    ||||||||||    |||||||||| |||||| |||||||||||||    
T  44686476 taaaagcatgttgattgattgtcagaacacgctttctcatgtttg 44686520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 44720374 - 44720440
Alignment:
Q  109 caaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgc 175  Q
    |||| ||||||||| |||||||||||||| |||||||||| ||||||||| |||| |||||||||||    
T  44720374 caaacggtataaaaacatgttgattgtcataacacgttttttcatgtttggccatcttacttgacgc 44720440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 3968474 - 3968402
Alignment:
Q  100 tgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttga 172  Q
    |||||||  ||||| |||||||||||| ||||||||||||||| |||||||||| |||||||| ||| |||||    
T  3968474 tgtcaaacgcaaattgtataaaagcatattgattgtcaaaacatgttttctcatatttgaccactttgcttga 3968402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 13147201 - 13147087
Alignment:
Q  64 gaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagc---atgttgattgtcaaaacacgttttctcatgtttgac 160  Q
    |||| ||||||  ||||| || ||| ||||| |||||||||||| ||||||||||||||     ||| ||||||||| |||||| |||||||||||||||    
T  13147201 gaaggtcaacaatctctggtgttagaaaaccaaaagtgtcaaaatcaaatggtataaaaagtatatgctgattgtcagaacacgctttctcatgtttgac 13147102  T
Q  161 cattttacttgacgc 175  Q
    || ||| ||||||||    
T  13147101 cacttttcttgacgc 13147087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 183
Target Start/End: Complemental strand, 16351987 - 16351823
Alignment:
Q  22 gagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaa---agtgtcaaaaacaaatggtat 118  Q
    |||| ||||||||| | | ||||||| ||||||||||| || |||| |||||| ||||||||| ||   | || ||   | |||||||| ||||   |||    
T  16351987 gagacatgacattgttgtgcatgaccatttgaactctatgtagaaggtcaacaacctctgatgataaagagccaaacaaaatgtcaaaagcaaacaatat 16351888  T
Q  119 aaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    ||||  ||||||||||| | ||||| |||||||||||||||||| ||| |||||| |||||||||    
T  16351887 aaaattatgttgattgtgagaacacattttctcatgtttgaccactttgcttgacacaactttta 16351823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 3825686 - 3825852
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||| ||| ||||||||| ||| |||||   ||||||||| | || |||| |||||| ||| |||||||||||||  |||||||||  || ||||||  |    
T  3825686 ctagaagacatgacattgctatgcatgattctttgaactcgatgttgaaggtcaacaacctttgatgctaggaaattgaaagtgtctgaagcaaatgaaa 3825785  T
Q  118 taaaagcatgttgattgtca--aaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    ||||| ||||| ||||||||  ||| |  |||| ||||||||||||| ||| ||||||||| ||||||    
T  3825786 taaaaacatgtagattgtcaggaaaaaactttt-tcatgtttgaccactttgcttgacgcagctttta 3825852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 157
Target Start/End: Complemental strand, 11921326 - 11921218
Alignment:
Q  49 tttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgtttt 148  Q
    ||||||||||| || |||| ||||||  || |||| | || |||  |||||| | ||||||||| |||||||||  ||||||||||||| ||||||||||    
T  11921326 tttgaactctatgtagaaggtcaacagtctatgataccagaaaattgaaagtataaaaaacaaacggtataaaaatatgttgattgtcagaacacgtttt 11921227  T
Q  149 ctcatgttt 157  Q
    || ||||||    
T  11921226 ctaatgttt 11921218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 1296111 - 1296032
Alignment:
Q  104 aaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    ||||| ||| ||||||||| |||||| ||||||| ||||  |||||||||||||| |||||||  |||||||| ||||||    
T  1296111 aaaaaaaaaaggtataaaaacatgtttattgtcagaacatattttctcatgtttggccattttgtttgacgcagctttta 1296032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 184
Target Start/End: Original strand, 29808086 - 29808200
Alignment:
Q  69 tcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttac 168  Q
    |||||| |||| ||||||||||||   | | ||| |||| |||||||||||||| |||||||||||| | |||||| | |||||||||||   | |||||    
T  29808086 tcaacaacctccgatgctaggaaataaataatgtgaaaagcaaatggtataaaa-catgttgattgttataacacgctgtctcatgtttggtgactttac 29808184  T
Q  169 ttgacgcaacttttaa 184  Q
    |||| |||||||||||    
T  29808185 ttgaggcaacttttaa 29808200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 5679316 - 5679392
Alignment:
Q  96 aaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttga 172  Q
    ||||||||||| | ||||||||| |||| ||||||||| ||  |||| ||||||||||||||| ||| ||| |||||    
T  5679316 aaagtgtcaaacataaatggtatgaaaggatgttgattatcttaacatgttttctcatgtttggccactttgcttga 5679392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 196
Target Start/End: Complemental strand, 7760961 - 7760815
Alignment:
Q  49 tttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgtttt 148  Q
    ||||||||||| || |||| |||||| |||||| || ||| ||||| || ||||| ||  ||||| |||  |||  |||| |||||| | | ||||||||    
T  7760961 tttgaactctatgtagaaggtcaacaacctctggtgatagaaaaccaaaggtgtctaatgcaaatcgtaagaaaatatgt-gattgttagatcacgtttt 7760863  T
Q  149 ctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtcc 196  Q
    |||||| ||| ||| |||||||||||| ||||| | || |||||||||    
T  7760862 ctcatgattggccactttacttgacgcgactttgagggttgcttgtcc 7760815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 31584248 - 31584161
Alignment:
Q  112 atggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccatttta---cttgacgcaacttttaaggatgcttgtcc 196  Q
    ||||||||| | |||||||||| ||| | ||||||||| |||||||||| | ||||   |||||||||||||| | || |||||||||    
T  31584248 atggtataagatcatgttgattctcagagcacgttttcccatgtttgacgactttattacttgacgcaactttgagggttgcttgtcc 31584161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 9200423 - 9200479
Alignment:
Q  116 tataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttga 172  Q
    ||||||| |||||| |||||||||||||| || ||| |||||||||| ||| |||||    
T  9200423 tataaaatcatgttaattgtcaaaacacgcttactcgtgtttgaccacttttcttga 9200479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 21472963 - 21473121
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||| ||| ||||||||||||||||||| || |||| |||||| |||||| ||||||||||| | ||||||||||| |||||||||    
T  21472963 ctaggagacatgacattgctatgcatgaccttttgaactctatgtagaaggtcaacagcctctggtgctaggaaactgcaagtgtcaaaagcaaatggta 21473062  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgca 176  Q
    ||||| |||||||||||||| |||||| ||||||||||||| |||||||||||||||||    
T  21473063 taaaaacatgttgattgtcagaacacgctttctcatgtttggccattttacttgacgca 21473121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 34644526 - 34644706
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| || |||||||||| ||| ||| |||| |||||| || |||| |||||| |||||||||||||||| |||||||||||||||||||||||||    
T  34644526 ctaggagacataacattgatatgcataaccctttggactctatgtagaaggtcaacaacctctgatgctaggaagccgaaagtgtcaaaaacaaatggta 34644625  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    ||||||||||| | |||||| |||||| ||||||||||||| ||| |||  ||||||||||||||| || |||||||||||    
T  34644626 taaaagcatgtaggttgtcagaacacgctttctcatgtttggccactttgtttgacgcaacttttagggttgcttgtccta 34644706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 29169940 - 29169777
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||| | | ||||||||||||||||||| || |||| | |||| |||||| ||||||||||||||||||||||||| |||||||||    
T  29169940 ctaggagacatgacattgctgtgcatgaccttttgaactctatgtagaaggttaacaacctctggtgctaggaaaccgaaagtgtcaaaagcaaatggta 29169841  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttt 181  Q
    |||||||||||||||||||| ||||||||||||| |||||| |||  ||||||||| |||||||    
T  29169840 taaaagcatgttgattgtcagaacacgttttctcgtgtttggccaccttacttgacacaacttt 29169777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 45659793 - 45659627
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||| ||| ||||| |||||||||||||  | |||| |||||| |||||| || ||||||| |||||||||||||| |||||||||    
T  45659793 ctaggagacatgacattgctatgcatgatcttttgaactcta--tagaaggtcaacagcctctggtgataggaaatcgaaagtgtcaaaagcaaatggta 45659696  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaagg 186  Q
    |||||||||||||||||||| |||||| |||||| |||||| |||  |||||||||||| |||||||||    
T  45659695 taaaagcatgttgattgtcagaacacgctttctcgtgtttggccaccttacttgacgcagcttttaagg 45659627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 28 - 186
Target Start/End: Complemental strand, 4862126 - 4861968
Alignment:
Q  28 tgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatg 127  Q
    |||||||| ||| ||||||| ||||||||||| || |||| |||||| | | || || ||||||| |||||||||||||| ||||| ||||||||| |||    
T  4862126 tgacattgttatgcatgaccctttgaactctatgtagaaggtcaacaacttttggtgttaggaaatcgaaagtgtcaaaagcaaattgtataaaagtatg 4862027  T
Q  128 ttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaagg 186  Q
    ||| |||||| || ||| |||||||||||||||||||||||||||||||||||||||||    
T  4862026 ttgcttgtcagaagacgctttctcatgtttgaccattttacttgacgcaacttttaagg 4861968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 30 - 175
Target Start/End: Complemental strand, 31737458 - 31737313
Alignment:
Q  30 acattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgtt 129  Q
    |||||||||| ||||||||||||||||||| || |||  |||| | ||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  31737458 acattgatatgcatgaccttttgaactctatgtagaatgtcaatagcctctaatgctagaaaatcgaaagtgtcaaaaacaaatggtataaaagcatgtt 31737359  T
Q  130 gattgtcaaaacacgttttctcatgtttgaccattttacttgacgc 175  Q
    |||||||| || | ||||||||||||||| ||| ||| ||||||||    
T  31737358 gattgtcagaatatgttttctcatgtttggccactttgcttgacgc 31737313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 22 - 183
Target Start/End: Complemental strand, 20259940 - 20259779
Alignment:
Q  22 gagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaa 121  Q
    |||| ||||||||  ||| ||||||||||||||||||| || |||| |||||| |||||| ||||| ||||||||||||||||| || ||||||||||||    
T  20259940 gagacatgacattactatgcatgaccttttgaactctatgtagaaggtcaacaacctctggtgctaagaaaccgaaagtgtcaacaataaatggtataaa 20259841  T
Q  122 agcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    | |||||||||||||| |||||| |||||||| ||| |||| ||| ||||||| | ||||||    
T  20259840 aacatgttgattgtcagaacacgctttctcatttttaaccactttgcttgacgtagctttta 20259779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 22346855 - 22347020
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||  ||| ||||||||||||||||||  || |||| |||||| |||||| | ||||||||||||||||||||||| |||| ||||    
T  22346855 ctaggagacatgacatttctatgcatgaccttttgaactctgtgtagaaggtcaacaacctctgctactaggaaaccgaaagtgtcaaaagcaaaaggta 22346954  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    |||| ||||||||||||||| |||||| |||||||| |||| ||| ||| ||||||  ||||||||    
T  22346955 taaacgcatgttgattgtcagaacacgctttctcatatttggccactttgcttgacataactttta 22347020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 27 - 175
Target Start/End: Complemental strand, 28041265 - 28041117
Alignment:
Q  27 atgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcat 126  Q
    ||||||||| ||| ||||||||||||||||||| || |||| |||||  |||||| ||||||||||||||||||||||||| |||||||||||||| | |    
T  28041265 atgacattgctatgcatgaccttttgaactctatgtagaaggtcaaccgcctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaaacct 28041166  T
Q  127 gttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgc 175  Q
    ||||||||||| |||||  ||||||||||||| ||| |||  |||||||    
T  28041165 gttgattgtcagaacacactttctcatgtttggccactttgtttgacgc 28041117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 24177658 - 24177540
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||||||||||||| ||| |||||| |||||||||||| || |||| | |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  24177658 ctaggagatatgacattgctatgcatgactttttgaactctatgtagaaggtaaacagcctctgatgctaggaaaccgaaactgtcaaaaacaaatggta 24177559  T
Q  118 taaaagcatgttgattgtc 136  Q
    |||||  ||||||||||||    
T  24177558 taaaaatatgttgattgtc 24177540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 19035465 - 19035572
Alignment:
Q  76 cctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgc 175  Q
    |||||| ||||||||||||| |||||||||||  |||||||||||||||||||||||||||| |||||| ||||||||||||| ||| ||| ||||||||    
T  19035465 cctctggtgctaggaaaccgtaagtgtcaaaagtaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgc 19035564  T
Q  176 aactttta 183  Q
    | ||||||    
T  19035565 agctttta 19035572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 30 - 183
Target Start/End: Original strand, 2764451 - 2764604
Alignment:
Q  30 acattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgtt 129  Q
    |||||||| | ||| ||| |||| ||| || || |||| |||||| |||||||||||||||| | |||||||||||||  |||||| |||||||||||||    
T  2764451 acattgatttgcataaccctttggactttatgtagaaggtcaacaacctctgatgctaggaagctgaaagtgtcaaaagaaaatggcataaaagcatgtt 2764550  T
Q  130 gattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    |||||||  |||||||||||||||||||||||| |||   |||| |||||||||    
T  2764551 gattgtcggaacacgttttctcatgtttgaccactttgtctgacacaactttta 2764604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 183
Target Start/End: Original strand, 2898666 - 2898830
Alignment:
Q  22 gagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaa 121  Q
    |||| |||| |||| ||| ||||| ||||||||||||| || |||| |||||| |||||| |||||||||||||||||| |||||| |||||||||||||    
T  2898666 gagacatgatattgttatgcatgatcttttgaactctatgtagaaggtcaacaacctctggtgctaggaaaccgaaagtatcaaaagcaaatggtataaa 2898765  T
Q  122 agcatgttgattgtcaaaacacg----ttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    | | | |||||||||| ||||||     ||||||||||||| ||| ||| ||||| ||| ||||||    
T  2898766 aac-tattgattgtcagaacacgctcactttctcatgtttggccactttgcttgatgcatctttta 2898830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 41 - 153
Target Start/End: Original strand, 38731592 - 38731704
Alignment:
Q  41 catgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaa 140  Q
    ||||||| ||||||||||| || |||| | |||| |||||| ||||| ||| || ||||| |||||| ||||| ||||||||| ||||||||||||| ||    
T  38731592 catgaccctttgaactctatgtagaaggttaacaacctctggtgctaagaagccaaaagtttcaaaagcaaattgtataaaagtatgttgattgtcagaa 38731691  T
Q  141 cacgttttctcat 153  Q
    |||| ||||||||    
T  38731692 cacgctttctcat 38731704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 183
Target Start/End: Original strand, 16500040 - 16500159
Alignment:
Q  64 gaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccat 163  Q
    |||| |||||| ||||| ||||||||||  | |||||||||||| ||||| ||||||| ||||||| ||||| | |||| ||||||| || |||| |||     
T  16500040 gaaggtcaacagcctctaatgctaggaagtcaaaagtgtcaaaagcaaatagtataaaggcatgttaattgttagaacatgttttcttatatttggccac 16500139  T
Q  164 tttacttgacgcaactttta 183  Q
    ||||| ||||||||||||||    
T  16500140 tttacgtgacgcaactttta 16500159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 90 - 189
Target Start/End: Original strand, 36486918 - 36487017
Alignment:
Q  90 aaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatg 189  Q
    ||||| |||||||||||| |||||  |||||||  || ||||||||||||||||| |||||||| |||||||| ||||||||| |||| |||||| ||||    
T  36486918 aaaccaaaagtgtcaaaagcaaattatataaaaagatattgattgtcaaaacacgctttctcatatttgaccactttacttgatgcaatttttaaagatg 36487017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 50161478 - 50161399
Alignment:
Q  104 aaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    ||||| ||||| |||||||||||||||||||| | |||||| ||||||||||||| ||| ||| ||||||||||||||||    
T  50161478 aaaaaaaaatgatataaaagcatgttgattgtgagaacacgctttctcatgtttgtccactttgcttgacgcaactttta 50161399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 37200012 - 37200122
Alignment:
Q  87 aggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaagg 186  Q
    ||||| || ||||||| ||||||||||||||||||| ||| |||||||| |  ||| | ||||| ||||||||||| ||||||||||| |||||||| ||    
T  37200012 aggaagccaaaagtgt-aaaaacaaatggtataaaaacatattgattgttagcacatgctttcttatgtttgaccactttacttgacgtaacttttatgg 37200110  T
Q  187 atgcttgtccta 198  Q
     ||| |||||||    
T  37200111 ctgcatgtccta 37200122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 7213210 - 7213314
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||| ||| ||||||||  ||| |||||| ||||||||| || |  |||| ||||||  |||| ||||||||||||||||||||||||||| ||||| ||    
T  7213210 ctagaagacatgacattattatgcatgacattttgaactttatgcagaagctcaacagtctctaatgctaggaaaccgaaagtgtcaaaaataaatgata 7213309  T
Q  118 taaaa 122  Q
    |||||    
T  7213310 taaaa 7213314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 86 - 182
Target Start/End: Complemental strand, 25375912 - 25375816
Alignment:
Q  86 taggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttt 182  Q
    |||||| || |||||||||| | |||||||||||||| ||||||||| || | |||| ||||| |||||||||  || ||| |||||||||||||||    
T  25375912 taggaagccaaaagtgtcaatagcaaatggtataaaaacatgttgatggtaagaacatgttttgtcatgtttggtcactttgcttgacgcaactttt 25375816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 69 - 183
Target Start/End: Complemental strand, 37932313 - 37932200
Alignment:
Q  69 tcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttac 168  Q
    |||||| |||||| ||||||||| |||||||||| |||||  |||  | ||||| || ||||||||||| |||||  |||||| | |||||||||||| |    
T  37932313 tcaacatcctctggtgctaggaagccgaaagtgtaaaaaaataataatgtaaaaacacgttgattgtcagaacac-ctttctcgtatttgaccattttgc 37932215  T
Q  169 ttgacgcaactttta 183  Q
    ||||| |||||||||    
T  37932214 ttgacacaactttta 37932200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 50314689 - 50314627
Alignment:
Q  100 tgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgacca 162  Q
    ||||||||  |||||||||||||||||||||||||| | |||| ||||| |||||||||||||    
T  50314689 tgtcaaaagtaaatggtataaaagcatgttgattgtgagaacaagttttgtcatgtttgacca 50314627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 5439071 - 5438995
Alignment:
Q  109 caaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaagg 186  Q
    ||||||||||||||  || ||||| || |||||||||||||| |||||||||||| ||||||||||| ||||| ||||    
T  5439071 caaatggtataaaaatat-ttgatagttaaaacacgttttcttatgtttgaccatattacttgacgcgactttgaagg 5438995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 156
Target Start/End: Complemental strand, 18616286 - 18616162
Alignment:
Q  32 attgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaa-gcatgttg 130  Q
    |||| ||| ||||||| |||||| | || || |||  |||||| |||| | |||||| ||  ||||||||| |||||||||||||||||||  |||||||    
T  18616286 attgctatgcatgaccctttgaattatatgtagaatgtcaacagcctcgggtgctagaaagtcgaaagtgttaaaaacaaatggtataaaacacatgttg 18616187  T
Q  131 attgtcaaaacacgttttctcatgtt 156  Q
    ||| ||  ||||||||||||||||||    
T  18616186 attatc-gaacacgttttctcatgtt 18616162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 42919843 - 42919999
Alignment:
Q  41 catgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaa 140  Q
    ||||||| ||| ||||||| || |||| | ||||  ||||  |||| ||||| | |||||||||||| || |||  |||||| |||||||||||| | ||    
T  42919843 catgaccctttaaactctatgtagaaggttaacaatctctactgcttggaaatcaaaagtgtcaaaagcagatgacataaaaacatgttgattgtgagaa 42919942  T
Q  141 cacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    |||| ||||||||||||| ||  |||  |||| |||||||||| || || ||||||||    
T  42919943 cacg-tttctcatgtttggccgctttgtttgatgcaacttttagggttgtttgtccta 42919999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 47459673 - 47459753
Alignment:
Q  49 tttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgtt 129  Q
    |||| |||||| || |||| |||||  |||||||| ||||||| || ||||| |||||| |||||||||||||| ||||||    
T  47459673 tttggactctatgtagaaggtcaactgcctctgatactaggaagccaaaagtatcaaaagcaaatggtataaaaacatgtt 47459753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 35387802 - 35387747
Alignment:
Q  19 taggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaaca 74  Q
    ||||||| ||||||||||||| |||| || ||||||||||| || |||||||||||    
T  35387802 taggagacatgacattgatatgcatgtccctttgaactctatgtagaagatcaaca 35387747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 15584916 - 15584988
Alignment:
Q  100 tgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttga 172  Q
    |||||||  ||||||||||| || |||||||||||||| || ||||||||  |||||||| || ||| |||||    
T  15584916 tgtcaaacgcaaatggtatagaaacatgttgattgtcagaatacgttttccaatgtttgatcactttgcttga 15584988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 36777709 - 36777753
Alignment:
Q  96 aaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaa 140  Q
    ||||||||||  ||||||| ||||||| |||||||||||||||||    
T  36777709 aaagtgtcaagtacaaatgatataaaatcatgttgattgtcaaaa 36777753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 53785669 - 53785826
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||| ||| ||||||||||||||||||| || |||| |||||| |||||| ||||||||||||||||||||||||| |||||||||    
T  53785669 ctaggagacatgacattgctatgcatgaccttttgaactctatgtagaaggtcaacaacctctggtgctaggaaaccgaaagtgtcaaaagcaaatggta 53785768  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgc 175  Q
    |||||||||||||||||||| |||||| |||||| |||||| |||  |||||||||||    
T  53785769 taaaagcatgttgattgtcagaacacgctttctcgtgtttggccaccttacttgacgc 53785826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 39583376 - 39583211
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||| ||| ||||||| ||||||||||| |  |||| |||||| ||| |||||||||||||||||||||||| |||||||||| ||    
T  39583376 ctaggagacatgacattgctatgcatgaccctttgaactctatgcagaaggtcaacaacctatgatgctaggaaaccgaaagtgtcgaaaacaaatgata 39583277  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    |||||||||||||||||||| |||||| ||||||||||||| ||| ||| ||||||||| ||||||    
T  39583276 taaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcagctttta 39583211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 52741659 - 52741519
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||| ||| ||||||||||||||||||| || |||| |||||| |||||| |||||||||||| |||||||||||| |||||||||    
T  52741659 ctaggagacatgacattgctatgcatgaccttttgaactctatgtagaaggtcaacaacctctggtgctaggaaaccaaaagtgtcaaaagcaaatggta 52741560  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttg 158  Q
    |||||||||||||||||||| |||||| |||||||||||||    
T  52741559 taaaagcatgttgattgtcagaacacgctttctcatgtttg 52741519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 37133145 - 37132981
Alignment:
Q  19 taggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtat 118  Q
    ||||||| ||||||||| ||| |||||||||| |||||||| || |||| |||||| |||||| ||||| |||||||||||||| |||||||||||||||    
T  37133145 taggagacatgacattgctatgcatgacctttagaactctatgtagaaggtcaacaacctctggtgctaagaaaccgaaagtgtaaaaaacaaatggtat 37133046  T
Q  119 aaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    |||| |||||||||||||| |||||| |||||||||||| |||| ||| ||||||| | ||||||    
T  37133045 aaaaacatgttgattgtcagaacacgctttctcatgtttaaccactttgcttgacgtagctttta 37132981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 44198727 - 44198892
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||| ||| ||| ||||| ||||||||| || |||| |||||| |||| | || || ||||||||||||||||||| |||||||||    
T  44198727 ctaggagacatgacattgctatgcataaccttctgaactctatgtagaaggtcaacagcctcgggtgttaagaaaccgaaagtgtcaaaagcaaatggta 44198826  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    |||||||||||||||| ||| |||||| ||||||||||||| ||| ||| ||||||||||||||||    
T  44198827 taaaagcatgttgattctcagaacacgctttctcatgtttggccactttgcttgacgcaactttta 44198892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 26772718 - 26772898
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| || |||||| ||| ||| | | |||| ||||||  | |||| |||||  |||||||||||||||| || |||||||||||| |||||||||    
T  26772718 ctaggagacataacattgttatgcataatcctttgtactctatatagaaggtcaactgcctctgatgctaggaagccaaaagtgtcaaaagcaaatggta 26772817  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    |||||||||||||||||||| |||||||||||| ||||||| ||| ||| |||||| ||||||||| |||||| |||||||    
T  26772818 taaaagcatgttgattgtcagaacacgttttctgatgtttggccactttgcttgacacaacttttagggatgcatgtccta 26772898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 26856909 - 26856755
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||| ||| ||||||| ||||||||||| || |||| ||||||  ||||  |||||||||| |||||| ||||||| || ||||||    
T  26856909 ctaggagacatgacattgctatgcatgaccctttgaactctatgtagaaggtcaacagtctctagtgctaggaaatcgaaagcgtcaaaagcagatggta 26856810  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttga 172  Q
    |||||||||||||||||||| |||||| ||| |||| ||||||||||||||||||    
T  26856809 taaaagcatgttgattgtcacaacacgctttatcatatttgaccattttacttga 26856755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 53 - 176
Target Start/End: Original strand, 7900853 - 7900976
Alignment:
Q  53 aactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctca 152  Q
    ||||||| || |||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||    
T  7900853 aactctatgtagaaggtcaacaacctctgatgctaggaagccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcagaaaacgctttctca 7900952  T
Q  153 tgtttgaccattttacttgacgca 176  Q
    |||| | | ||||| |||||||||    
T  7900953 tgttcggctattttgcttgacgca 7900976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 27 - 198
Target Start/End: Original strand, 49017932 - 49018103
Alignment:
Q  27 atgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcat 126  Q
    |||||||| |||| |||||||||||||||| ||||| ||||||||||| |||| | |||||||||||||||||||| ||||| ||||||||||||| |||    
T  49017932 atgacatttatatgcatgaccttttgaactttacgtagaagatcaacaacctcgggtgctaggaaaccgaaagtgtaaaaaaaaaatggtataaaaacat 49018031  T
Q  127 gttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    ||||||||| | |||||  |||||||||||||  || |||  || ||| |||||| | || |||||||||||    
T  49018032 gttgattgttagaacacactttctcatgtttggtcactttgttttacgtaactttcagggttgcttgtccta 49018103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 32546755 - 32546895
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||  ||| |||||| |||||||||||| || |||| |||||| ||| || ||||||||||| ||||||||||||| |||||||||    
T  32546755 ctaggagacatgacattactatgcatgactttttgaactctatgtagaaggtcaacagcctttggtgctaggaaactgaaagtgtcaaaagcaaatggta 32546854  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttg 158  Q
    |||||| ||||||||||||  |||||| |||||||||||||    
T  32546855 taaaagtatgttgattgtccgaacacgctttctcatgtttg 32546895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 22 - 183
Target Start/End: Complemental strand, 38978942 - 38978781
Alignment:
Q  22 gagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaa 121  Q
    |||| ||||||||| ||| ||| |||||||||||| || || |||| |||||  |||| | |||||||||||| |||||||||||||||||| |||||||    
T  38978942 gagacatgacattgttatgcatcaccttttgaactatatgtagaaggtcaacggcctcaggtgctaggaaaccaaaagtgtcaaaaacaaatagtataaa 38978843  T
Q  122 agcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    | ||| ||||||||||||| |||||||| ||||| | |||| ||| |||||| |||||||||    
T  38978842 aacatattgattgtcaaaatacgttttcacatgtctaaccaatttgcttgacacaactttta 38978781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 51234577 - 51234718
Alignment:
Q  19 taggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtat 118  Q
    ||||||| || |||||| ||| ||| ||||||||||||||| || |||| |||||| ||||||||||||| ||  ||||||||||||||| |||||||||    
T  51234577 taggagacataacattgttatgcataaccttttgaactctatgtagaaggtcaacaacctctgatgctagaaagtcgaaagtgtcaaaaataaatggtat 51234676  T
Q  119 aaaagcatgttgattgtcaaaacacgttttctcatgtttgac 160  Q
    |||||||||||| |||||| |||| | ||| |||||||||||    
T  51234677 aaaagcatgttggttgtcataacatgctttttcatgtttgac 51234718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 41 - 183
Target Start/End: Complemental strand, 3443436 - 3443294
Alignment:
Q  41 catgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaa 140  Q
    ||||||| ||||||||||| || |||| |||||| |||||  ||||||||||| ||||||||||| |  |||||||||||||||||||||||||| | ||    
T  3443436 catgaccctttgaactctatgtagaaggtcaacaacctctagtgctaggaaactgaaagtgtcaacagaaaatggtataaaagcatgttgattgttagaa 3443337  T
Q  141 cacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
     ||  ||| ||||||||| ||||||| ||||||||||||||||    
T  3443336 tacactttttcatgtttggccattttgcttgacgcaactttta 3443294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 76 - 173
Target Start/End: Complemental strand, 38670969 - 38670873
Alignment:
Q  76 cctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgac 173  Q
    ||||||||||||| || || |||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||| || ||||||||||    
T  38670969 cctctgatgctagaaagccaaaagtgtcaaaaacaaattgtataaaagcatgttgattgtcagaacacgctttctcatgtttga-cactttacttgac 38670873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 13582470 - 13582649
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||| ||| ||||||||||||||||||  || |||| ||||||     || |||||||||| | ||||||| ||||||||||||||    
T  13582470 ctaggagacatgacattgttatgcatgaccttttgaactctctgtagaaggtcaacaattgttggtgctaggaaatcaaaagtgt-aaaaacaaatggta 13582568  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    ||||| || ||||||||||| |||||  ||||| |||||||| || |||  |||||||| |||||| || |||||||||||    
T  13582569 taaaaacacgttgattgtcagaacacactttcttatgtttgatcactttgattgacgcagcttttagggctgcttgtccta 13582649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 21552651 - 21552766
Alignment:
Q  41 catgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaa 140  Q
    ||||||||||||||||||| || |||| ||||||  ||||||||||||||||| |||| ||||||||| ||||||||| |||||||||||||||||| ||    
T  21552651 catgaccttttgaactctatgtagaaggtcaacagtctctgatgctaggaaactgaaaatgtcaaaaataaatggtat-aaagcatgttgattgtcataa 21552749  T
Q  141 cacgttttctcatgttt 157  Q
     || ||||| |||||||    
T  21552750 tacattttcccatgttt 21552766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 38146016 - 38146160
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||| ||| ||||||| ||||||||||| || |||  | |||| |||||| |||||||||  | |||||||||||   ||||||||    
T  38146016 ctaggagacatgacattgttatgcatgaccctttgaactctaagtagaatgtaaacaacctctggtgctaggaagtcaaaagtgtcaaatgtaaatggta 38146115  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgacca 162  Q
    ||||| ||||||||||||||||||||||| ||||  |||||||||    
T  38146116 taaaaacatgttgattgtcaaaacacgttgtctcgcgtttgacca 38146160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 96 - 183
Target Start/End: Complemental strand, 46940839 - 46940752
Alignment:
Q  96 aaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    |||||||||||||||||||||||||||||||||||||||||  |||| ||||||| ||||||| ||| ||| ||||||||| ||||||    
T  46940839 aaagtgtcaaaaacaaatggtataaaagcatgttgattgtcggaacatgttttctaatgtttggccactttgcttgacgcatctttta 46940752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 27 - 173
Target Start/End: Complemental strand, 7502148 - 7502003
Alignment:
Q  27 atgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaag-ca 125  Q
    ||||||||| | | ||||||| ||| ||||||  || |||| |||||| |||||| |||||||||||| ||| ||||||||  |||||||||||||  ||    
T  7502148 atgacattgttgtgcatgaccctttaaactct--gtagaaggtcaacaacctctggtgctaggaaaccaaaaatgtcaaaagaaaatggtataaaaaaca 7502051  T
Q  126 tgttgattgtcaaaacacgttttctcatgtttgaccattttacttgac 173  Q
    ||||||||||   |||||| ||||||||||||||||| ||||||||||    
T  7502050 tgttgattgttcgaacacgctttctcatgtttgaccactttacttgac 7502003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 179
Target Start/End: Original strand, 5338626 - 5338767
Alignment:
Q  41 catgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaa-- 138  Q
    ||||||||||||||||||| || |||  ||||||  ||||  ||||||||| ||||||||||||||| ||||| ||||||||||||||||| ||||||      
T  5338626 catgaccttttgaactctatgtagaatgtcaacaatctctagtgctaggaagccgaaagtgtcaaaagcaaattgtataaaagcatgttgactgtcaacg 5338725  T
Q  139 -aacacgttttctcatgtttgaccattttacttgacgcaact 179  Q
     ||| |  ||||||||||||| | |||||  |||||||||||    
T  5338726 caacgcactttctcatgtttggcaattttgtttgacgcaact 5338767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 52412038 - 52411903
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||| ||| ||||||| ||||||||||| || |||| |||||  | |||  || ||| || | ||||||||||||| ||||||| |    
T  52412038 ctaggagacatgacattgttatgcatgaccctttgaactctatgtagaaggtcaacgacatctagtgttagaaagctgaaagtgtcaaaagcaaatggaa 52411939  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcat 153  Q
    |||||||||||||||||||| |||||| | ||||||    
T  52411938 taaaagcatgttgattgtcagaacacgctctctcat 52411903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 183
Target Start/End: Original strand, 25324999 - 25325156
Alignment:
Q  28 tgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagc--a 125  Q
    |||||||| ||| ||||| | ||||||||||| || |||| ||||||  || || |||||||||| |||||||||  ||| |||||||||||||| |  |    
T  25324999 tgacattgctatgcatgatcatttgaactctatgtagaaggtcaacaatctatggtgctaggaaatcgaaagtgttgaaagcaaatggtataaaaacata 25325098  T
Q  126 tgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    ||||||||| ||||| ||||||| | ||||||   || ||| ||||||||||||||||    
T  25325099 tgttgattgccaaaatacgttttataatgttttgtcactttgcttgacgcaactttta 25325156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 4473081 - 4473189
Alignment:
Q  78 tctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaa 177  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||| ||| ||||| || | |||||| ||| ||||||||   || ||| ||||||||||    
T  4473081 tctggtgctaggaagccgaaagtgtcaaaaacaaatagtataaaaacatattgatggttagaacacgctttttcatgttttgacactttgcttgacgcaa 4473180  T
Q  178 cttttaagg 186  Q
     ||||||||    
T  4473181 tttttaagg 4473189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 54508485 - 54508367
Alignment:
Q  64 gaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgtttt-ctcatgtttgacca 162  Q
    |||| |||||| |||||| |||||| ||| | ||| |||||||| |||||| ||||||| |||||| ||||||| |||| ||||| |||||||||  |||    
T  54508485 gaaggtcaacaacctctggtgctagaaaatcaaaaatgtcaaaagcaaatgatataaaaacatgttaattgtcagaacaagtttttctcatgtttagcca 54508386  T
Q  163 ttttacttgacgcaacttt 181  Q
    ||||  |||||||||||||    
T  54508385 ttttgtttgacgcaacttt 54508367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 190
Target Start/End: Complemental strand, 3376842 - 3376715
Alignment:
Q  64 gaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtata-aaagcatgttgattgtcaaaacacgttttctcatgtttgacca 162  Q
    |||| |||||| |||||  |||||||||||| |||  ||||||| |||||||| || |||  ||||||||||| | || | ||||| |||||||| ||||    
T  3376842 gaaggtcaacaacctctagtgctaggaaaccaaaaaagtcaaaagcaaatggtctataaaatatgttgattgtgagaatatgttttatcatgtttaacca 3376743  T
Q  163 ttttacttgacgcaacttttaaggatgc 190  Q
    |||| |||||||||  ||||||| ||||    
T  3376742 tttttcttgacgcagtttttaagaatgc 3376715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 44796 - 44859
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctg 81  Q
    |||||| | ||||||||| ||| ||||||||||||||||||| || |||| |||||| ||||||    
T  44796 ctaggaaacatgacattgctatgcatgaccttttgaactctatgtagaaggtcaacagcctctg 44859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 13764556 - 13764630
Alignment:
Q  84 gctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttg 158  Q
    |||||||| || |||||||| || |||||||||||| ||| |||||||||||  || ||| |||| |||||||||    
T  13764556 gctaggaagccaaaagtgtcgaacacaaatggtatacaagaatgttgattgttgaagcaccttttatcatgtttg 13764630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 35484758 - 35484684
Alignment:
Q  99 gtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgac 173  Q
    ||||||||  ||||| ||| |||| ||||||||||||   ||||  |||||||||||||||||| ||||||||||    
T  35484758 gtgtcaaatgcaaatagtacaaaaacatgttgattgttggaacatattttctcatgtttgaccactttacttgac 35484684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 30 - 183
Target Start/End: Complemental strand, 45812 - 45659
Alignment:
Q  30 acattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgtt 129  Q
    |||||| ||| ||||||||||||||||||| || |||| |||||| |||||| ||||| ||||||||||||||||||||||||||| |||||||||||||    
T  45812 acattgctatgcatgaccttttgaactctatgtagaaggtcaacagcctctggtgctaagaaaccgaaagtgtcaaaaacaaatggaataaaagcatgtt 45713  T
Q  130 gattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    |||||||| ||||||||||||||||||||| || ||| ||||| ||| ||||||    
T  45712 gattgtcagaacacgttttctcatgtttgatcactttgcttgatgcagctttta 45659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 4206743 - 4206563
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    ||||| || |||||||||  || ||||||||||||||||||| || |||| |||||| |||||| ||||||||| ||||||||||||||| |||||| ||    
T  4206743 ctaggtgacatgacattgtcatgcatgaccttttgaactctatgtagaaggtcaacaacctctggtgctaggaacccgaaagtgtcaaaagcaaatgata 4206644  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    |||||||||||| ||||||| |||||| ||||||||||||  ||| ||| |||||||| |||||||||| ||| |||||||    
T  4206643 taaaagcatgttcattgtcagaacacgctttctcatgtttagccactttgcttgacgccacttttaaggctgcatgtccta 4206563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 30 - 198
Target Start/End: Original strand, 959553 - 959720
Alignment:
Q  30 acattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgtt 129  Q
    |||||| ||| |||||||||||||||| ||||| |||| |||||| |||||| |||||||||||||||| ||||||||||||||||||||||  ||||||    
T  959553 acattgctatgcatgaccttttgaact-tacgtagaaggtcaacaacctctggtgctaggaaaccgaaaatgtcaaaaacaaatggtataaagacatgtt 959651  T
Q  130 gattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    |||||||| |||||||||||||||| ||  ||| ||| |||||| ||||||||| || || ||||||||    
T  959652 gattgtcagaacacgttttctcatggttagccactttgcttgacacaacttttagggttgtttgtccta 959720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 4166069 - 4165930
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    ||||| || |||||||||  || ||||||||||| ||||||| || |||| |||||| |||||| ||||||||| ||||||||||||||| |||||| ||    
T  4166069 ctaggtgacatgacattgtcatgcatgaccttttaaactctatgtagaaggtcaacaacctctggtgctaggaacccgaaagtgtcaaaagcaaatgata 4165970  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgttt 157  Q
    |||||||||||||||||||| |||||| ||||||||||||    
T  4165969 taaaagcatgttgattgtcagaacacgctttctcatgttt 4165930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 17249451 - 17249272
Alignment:
Q  19 taggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtat 118  Q
    ||||||| || |||||| ||| ||| | | |||| |||||| || |||| |||||  |||||||||||||||| || |||||||||||| ||||||||||    
T  17249451 taggagacataacattgctatacataatcctttggactctatgtagaaggtcaactgcctctgatgctaggaagccaaaagtgtcaaaagcaaatggtat 17249352  T
Q  119 aaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    ||||||||||||||||||| |||||  ||||||||||||| ||| |||  ||||||||||||||| || || ||||||||    
T  17249351 aaaagcatgttgattgtcagaacacactttctcatgtttggccactttgtttgacgcaacttttagggttgtttgtccta 17249272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 30 - 183
Target Start/End: Complemental strand, 33220846 - 33220693
Alignment:
Q  30 acattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgtt 129  Q
    |||||| ||| ||| ||| |||| ||| || || |||| |||||| |||| ||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  33220846 acattgctatgcataaccctttggactatatgtagaaggtcaacaacctcggatgctaggaagccgaaagtgtcaaaagcaaatggtataaaagcatgtt 33220747  T
Q  130 gattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    ||||||||| ||||| ||||||||||||| ||| ||| ||||| ||| ||||||    
T  33220746 gattgtcaacacacgctttctcatgtttggccactttgcttgatgcagctttta 33220693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 27 - 190
Target Start/End: Original strand, 34415405 - 34415568
Alignment:
Q  27 atgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcat 126  Q
    ||||||||| ||| ||||||| |||||||||||  | |||| |||||  | | || || ||||||||| |||||||||||||||||||| ||||||||||    
T  34415405 atgacattgctatgcatgaccatttgaactctatatagaaggtcaactgcatttggtgttaggaaacctaaagtgtcaaaaacaaatggcataaaagcat 34415504  T
Q  127 gttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgc 190  Q
    ||||||||||| |||||  ||||||||||||  ||||||| ||||||||| ||| |||||||||    
T  34415505 gttgattgtcagaacacactttctcatgtttcgccattttgcttgacgcagcttgtaaggatgc 34415568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 49 - 183
Target Start/End: Original strand, 34304487 - 34304621
Alignment:
Q  49 tttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgtttt 148  Q
    |||| |||||| || |||| |||||| | |||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||| |||||| |||    
T  34304487 tttggactctatgtagaaggtcaacatcatctgatgctaggaagcccaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgcttt 34304586  T
Q  149 ctcatgtttgaccattttacttgacgcaactttta 183  Q
    ||||||||||   ||||| ||||||||| ||||||    
T  34304587 ctcatgtttggttattttgcttgacgcagctttta 34304621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 24016298 - 24016462
Alignment:
Q  19 taggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtat 118  Q
    ||||||| ||||||||  | | ||||||| ||||||||||| ||  || ||||||| | |||| |||||||||||| ||| | |||| | ||||||||||    
T  24016298 taggagacatgacattcttgtgcatgaccctttgaactctatgtaaaaaatcaacaacatctggtgctaggaaaccaaaactatcaatagcaaatggtat 24016397  T
Q  119 aaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    |||| |||||||||||| | |||| | ||||||||||||||| ||||||||||| ||||||||||    
T  24016398 aaaaacatgttgattgtgagaacaagctttctcatgtttgactattttacttgatgcaactttta 24016462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 22 - 181
Target Start/End: Original strand, 28625895 - 28626054
Alignment:
Q  22 gagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtat-aa 120  Q
    |||||||||||| | ||| |||||||||||||||| || || |||| |||||| |||||| ||||||||||  |||||||| ||||||||||||||| ||    
T  28625895 gagatatgacat-gttatgcatgaccttttgaactttatgtagaagctcaacaacctctggtgctaggaaattgaaagtgtaaaaaacaaatggtataaa 28625993  T
Q  121 aagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttt 181  Q
    ||  ||||||||||||| ||||||||||||| |||||  |||  |||||||||||| ||||    
T  28625994 aaaaatgttgattgtcagaacacgttttctcgtgtttagccaccttacttgacgcagcttt 28626054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 22 - 183
Target Start/End: Complemental strand, 34554420 - 34554259
Alignment:
Q  22 gagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaa 121  Q
    |||| |||| |||| ||| ||||||||||| ||||||| || |||  |||| | | |||| ||||||||| ||||| |||||||||  ||||||||||||    
T  34554420 gagacatgatattgctatacatgaccttttaaactctatgtagaaagtcaatagcatctggtgctaggaagccgaatgtgtcaaaagtaaatggtataaa 34554321  T
Q  122 agcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    | ||| |||||| ||| |||||| |||||||||||||  | |||| ||||||||||||||||    
T  34554320 aacatcttgattatcagaacacgctttctcatgtttggtcgttttgcttgacgcaactttta 34554259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 77 - 195
Target Start/End: Original strand, 28543394 - 28543512
Alignment:
Q  77 ctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgca 176  Q
    |||| |||||||||| | ||||||||||||| ||||| |||||| |||||  ||||| |||||||||| ||||||||||||| ||| ||| ||||||||     
T  28543394 ctctaatgctaggaagctgaaagtgtcaaaatcaaatagtataagagcatagtgattttcaaaacacgatttctcatgtttggccactttgcttgacgcg 28543493  T
Q  177 acttttaaggatgcttgtc 195  Q
    |||||||||| ||| ||||    
T  28543494 acttttaaggctgcctgtc 28543512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 29338226 - 29338086
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||  ||||||||||| | ||||||| |||||||  || || |||| |||||   ||||| |||||||||  |  ||||||||||| |||||||||    
T  29338226 ctaggagtcatgacattgatgtgcatgaccctttgaaccatatgtagaaggtcaacgatctctggtgctaggaagtcagaagtgtcaaaagcaaatggta 29338127  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttg 158  Q
    ||| |||||||||||||| | ||||||||||||||||||||    
T  29338126 taagagcatgttgattgttagaacacgttttctcatgtttg 29338086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 198
Target Start/End: Complemental strand, 357832 - 357684
Alignment:
Q  49 tttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgtttt 148  Q
    |||| |||||| || |||| ||| || ||||| ||| ||||||||  ||||||| ||||||||| | |||||||||||||| ||||||| |||||| |||    
T  357832 tttggactctatgtagaaggtcatcaacctctaatgttaggaaaca-aaagtgttaaaaacaaaggttataaaagcatgttcattgtcagaacacgcttt 357734  T
Q  149 ctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    |||||||||| ||| ||| ||||||| | |||||| || ||| |||||||    
T  357733 ctcatgtttggccactttgcttgacgaagcttttagggctgcctgtccta 357684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 3714955 - 3715042
Alignment:
Q  96 aaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    ||||||||||||||| ||| ||||||| |||||| ||||| | ||||||||||||||||||| ||||||||  ||||| |||||||||    
T  3714955 aaagtgtcaaaaacagatgatataaaaacatgttaattgtgagaacacgttttctcatgtttaaccattttgtttgacacaactttta 3715042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 198
Target Start/End: Original strand, 34168913 - 34169008
Alignment:
Q  103 caaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    ||||| |||||||||||||||||||||| ||||| ||||| | ||||||||||||| ||| ||| |||||||||| ||||| || ||| |||||||    
T  34168913 caaaagcaaatggtataaaagcatgttgcttgtccaaacatgctttctcatgtttggccactttgcttgacgcaaattttagggttgcatgtccta 34169008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 6225110 - 6225191
Alignment:
Q  96 aaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaa 177  Q
    ||||||||||| |||||||  ||| ||||||||||||||||| ||||   ||||||||||||||||| |||| |||||||||    
T  6225110 aaagtgtcaaacacaaatgacatataagcatgttgattgtcacaacaaaatttctcatgtttgaccactttatttgacgcaa 6225191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 12401384 - 12401471
Alignment:
Q  111 aatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    ||||||||| |||||||||||||  ||||||||| | ||| ||||||| ||| |||  |||||||||||||||  | |||||||||||    
T  12401384 aatggtatataagcatgttgattagcaaaacacgctatcttatgtttggccactttgtttgacgcaacttttagtgctgcttgtccta 12401471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 172
Target Start/End: Complemental strand, 13398319 - 13398175
Alignment:
Q  28 tgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatg 127  Q
    |||||||| ||| ||| | ||||||||||||| || |||  |||||| | ||||||| ||||||  | ||| | ||||||  |||| ||||||||  |||    
T  13398319 tgacattgttatgcatcatcttttgaactctatgtagaatgtcaacaacttctgatgttaggaagtcaaaaatatcaaaagtaaatagtataaaaatatg 13398220  T
Q  128 ttgattgtcaaaacacgttttctcatgtttgaccattttacttga 172  Q
    |||||||||  |||| | ||| |||| ||||||| ||||||||||    
T  13398219 ttgattgtcggaacatgctttttcatatttgaccgttttacttga 13398175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 198
Target Start/End: Complemental strand, 28009059 - 28008954
Alignment:
Q  96 aaagtgtcaaaaacaaatggtataaaagcatgtt---gattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgctt 192  Q
    |||||||||||| |||||||||||||| ||| ||   |||||| | |||| | ||||||||||||||||  ||| ||||||| | |||||| || ||| |    
T  28009059 aaagtgtcaaaagcaaatggtataaaaccatattcttgattgttagaacaagctttctcatgtttgaccgctttgcttgacgtagcttttagggttgcat 28008960  T
Q  193 gtccta 198  Q
    ||||||    
T  28008959 gtccta 28008954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 32115777 - 32115830
Alignment:
Q  146 tttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtcctaa 199  Q
    ||||||||||||| ||| |||  |||||||||||||||||| ||| ||||||||    
T  32115777 tttctcatgtttggccactttgtttgacgcaacttttaaggctgcatgtcctaa 32115830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 22985905 - 22986025
Alignment:
Q  42 atgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaac 141  Q
    ||||||||||| ||||||  | |||| | |||| ||| ||||| |||| | || ||| ||||||| |||| | ||||||||| | |||||||| || |||    
T  22985905 atgaccttttggactctatatagaaggtaaacaacctatgatgttaggtagccaaaaatgtcaaacacaagtagtataaaagtacgttgattgccataac 22986004  T
Q  142 acgttttctcatgtttgacca 162  Q
    | |||||||||  ||||||||    
T  22986005 atgttttctcacatttgacca 22986025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 162
Target Start/End: Complemental strand, 23802489 - 23802369
Alignment:
Q  42 atgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaac 141  Q
    ||||||||||| ||||||  | |||| | |||| ||| ||||| |||| | || ||| ||||||| |||| | ||||||||| | |||||||| || |||    
T  23802489 atgaccttttggactctatatagaaggtaaacaacctatgatgttaggtagccaaaaatgtcaaacacaagtagtataaaagtacgttgattgccataac 23802390  T
Q  142 acgttttctcatgtttgacca 162  Q
    | |||||||||  ||||||||    
T  23802389 atgttttctcacatttgacca 23802369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 32115678 - 32115718
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactct 58  Q
    |||||||| ||||||||| ||| ||||||||||||||||||    
T  32115678 ctaggagacatgacattgttatgcatgaccttttgaactct 32115718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 29 - 183
Target Start/End: Original strand, 500199 - 500352
Alignment:
Q  29 gacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgt 128  Q
    ||||||||||| ||||||||||||||||||| || ||||  ||||||| ||| || |||||||||||||| ||||||||  |||||||||||||||||||    
T  500199 gacattgatatgcatgaccttttgaactctatgtagaaggccaacacc-tctcatactaggaaaccgaaaatgtcaaaagtaaatggtataaaagcatgt 500297  T
Q  129 tgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    ||||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||    
T  500298 tgattgtcagaacacgttttctcatgtttggccactttgcttgacgcaactttta 500352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 38815254 - 38815394
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||| ||| ||||||| ||||||||||| || |||| ||||||||||||| ||||||||| | ||||||||||||| |||||||||    
T  38815254 ctaggagacatgacattgctatgcatgaccctttgaactctatgtagaaggtcaacaccctctggtgctaggaagcggaaagtgtcaaaagcaaatggta 38815353  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttg 158  Q
    |||||||||||||||||||| |||||| |||||||||||||    
T  38815354 taaaagcatgttgattgtcagaacacgctttctcatgtttg 38815394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 30 - 183
Target Start/End: Original strand, 39434639 - 39434792
Alignment:
Q  30 acattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgtt 129  Q
    |||||||||| ||| ||| |||| |||||| || |||||||||   ||||||||||||||||  | ||||||||||||||||||||||||||||||||||    
T  39434639 acattgatatgcataaccctttggactctatgtagaagatcaaatgcctctgatgctaggaagtcaaaagtgtcaaaaacaaatggtataaaagcatgtt 39434738  T
Q  130 gattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    |||||||| |||||| ||||||||||||| ||| ||| ||||||||||||||||    
T  39434739 gattgtcagaacacgctttctcatgtttggccactttgcttgacgcaactttta 39434792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 22 - 196
Target Start/End: Original strand, 24124992 - 24125166
Alignment:
Q  22 gagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaa 121  Q
    |||| ||||||||| ||| |||||||||||||||| || || ||||  ||||| |||||| |||||||||| | ||| |||||||| |||||||||||||    
T  24124992 gagacatgacattgctatgcatgaccttttgaactttatgtagaaggccaacaacctctggtgctaggaaatcaaaattgtcaaaagcaaatggtataaa 24125091  T
Q  122 agcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtcc 196  Q
    |||||||||||||||| | |||| ||||||||||||| ||||||| ||||| ||| |||||| || |||||||||    
T  24125092 agcatgttgattgtcagagcacgctttctcatgtttggccattttgcttgatgcagcttttagggctgcttgtcc 24125166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 22 - 183
Target Start/End: Original strand, 6592540 - 6592700
Alignment:
Q  22 gagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaa 121  Q
    |||| |||||||| |||| ||||||||||||||||||| |  |||| |||||| ||||||  |||||||||| ||||||||||||| |||||||| ||||    
T  6592540 gagacatgacatt-atatgcatgaccttttgaactctatgcagaaggtcaacaacctctggagctaggaaactgaaagtgtcaaaagcaaatggtttaaa 6592638  T
Q  122 agcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    | |||||||||||| | |||||| ||||||||||||| ||| ||| ||||||||| ||||||    
T  6592639 atcatgttgattgtgagaacacgctttctcatgtttggccactttgcttgacgcagctttta 6592700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 35740133 - 35739953
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    ||||| || ||||||||| ||| |||||| |||||||||||| || |||| ||||||  ||||| ||||||||||| ||||||||||||| | ||| |||    
T  35740133 ctaggggacatgacattgttatgcatgactttttgaactctatgtagaaggtcaacaatctctggtgctaggaaactgaaagtgtcaaaagctaattgta 35740034  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    ||||| |||||||||||||| ||| || ||||||||||||| ||| ||| ||| || ||||||||| |||||  |||||||    
T  35740033 taaaaacatgttgattgtcagaacccgctttctcatgtttggccactttgcttaacacaacttttagggatgtctgtccta 35739953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 3187930 - 3188094
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| || |||||| ||| ||| ||| ||||| ||||| || |||| | |||| |||||||||||||||| |||||||| |||||| |||||||||    
T  3187930 ctaggagacataacattgctatgcataaccctttga-ctctatgtagaaggttaacaacctctgatgctaggaagccgaaagtttcaaaagcaaatggta 3188028  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    |||||||||||||||||||| |||||| || |||||||||  ||| ||| ||||| ||||||||||    
T  3188029 taaaagcatgttgattgtcagaacacgcttcctcatgttttgccactttgcttgatgcaactttta 3188094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 69 - 183
Target Start/End: Original strand, 8619825 - 8619939
Alignment:
Q  69 tcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttac 168  Q
    |||||| |||||| || ||| || || ||| ||| |||||||||||||||||||||| |||||||||||||| ||| ||| |||||||||||||||||||    
T  8619825 tcaacaacctctggtgttagaaagccaaaaatgttaaaaacaaatggtataaaagcacgttgattgtcaaaatacgctttttcatgtttgaccattttac 8619924  T
Q  169 ttgacgcaactttta 183  Q
    |||||||||||||||    
T  8619925 ttgacgcaactttta 8619939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 25021961 - 25021796
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||||||||||||| | | ||||||| |||||||| |  ||||| | |||||| |||||| ||||||||| || ||| ||||||||  ||||||||    
T  25021961 ctaggagatatgacattgttgtgcatgaccctttgaactttgtgtggatggtcaacaacctctggtgctaggaagccaaaaatgtcaaaagaaaatggta 25021862  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    ||||| |||||||||||| | |||||  |||||||| ||| |||| ||| |||||| |||||||||    
T  25021861 taaaaacatgttgattgtgagaacacactttctcatatttcaccactttgcttgacacaactttta 25021796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 8882319 - 8882445
Alignment:
Q  49 tttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgtttt 148  Q
    ||||||||||| ||| | | |||||| |||||| |||||| |||| |||||| ||||||||||||||| ||||||||| |||||||||| |||||| |||    
T  8882319 tttgaactctatgtgaatgttcaacaacctctggtgctagaaaactgaaagt-tcaaaaacaaatggtttaaaagcatattgattgtcagaacacgcttt 8882417  T
Q  149 ctcatgtttgaccattttacttgacgca 176  Q
    |||||||||| ||| ||| |||||||||    
T  8882418 ctcatgtttggccactttgcttgacgca 8882445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 22 - 183
Target Start/End: Original strand, 6618249 - 6618409
Alignment:
Q  22 gagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaa 121  Q
    |||| |||||||| |||| ||||||||||||||| ||| |   ||| ||||||  |||||  |||||||||| ||||||||||||| |||||||| ||||    
T  6618249 gagacatgacatt-atatgcatgaccttttgaacgctatgcaaaaggtcaacaatctctggagctaggaaactgaaagtgtcaaaagcaaatggtttaaa 6618347  T
Q  122 agcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    | |||||||||||| | |||||| |||||||||||| || | | || |||||||||||||||    
T  6618348 atcatgttgattgtgagaacacgctttctcatgtttaactactctatttgacgcaactttta 6618409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 37514193 - 37514298
Alignment:
Q  30 acattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgtt 129  Q
    |||||||||| ||||||||||||||||||| || |||| |||||| ||||||  |||||||||  ||||||||||||| ||||| ||||||| |||||||    
T  37514193 acattgatatgcatgaccttttgaactctatgtagaaggtcaacagcctctggcgctaggaaattgaaagtgtcaaaagcaaatagtataaacgcatgtt 37514292  T
Q  130 gattgt 135  Q
    ||||||    
T  37514293 gattgt 37514298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 28196152 - 28196291
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||| | | ||||| | |||||||||||||| || | |||||| ||| || |||||||||  | ||||||||||||||||||||||    
T  28196152 ctaggagacatgacattgttgtgcatgatcctttgaactctacgtagatggtcaacaacctatggtgctaggaagacaaaagtgtcaaaaacaaatggta 28196251  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgttt 157  Q
    ||||| |||||| ||| ||| |||||  ||||||||||||    
T  28196252 taaaaacatgtttattatcataacacactttctcatgttt 28196291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 86 - 183
Target Start/End: Complemental strand, 42922206 - 42922109
Alignment:
Q  86 taggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    |||||| || |||||||||||  |||||| | ||||||||| |||||||||||||||||||||||||  ||||||||||||  |||||||||||||||    
T  42922206 taggaagccaaaagtgtcaaaggcaaatgatttaaaagcattttgattgtcaaaacacgttttctcaaatttgaccattttgtttgacgcaactttta 42922109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 22589479 - 22589394
Alignment:
Q  22 gagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaa 108  Q
    |||| ||||||||| ||| ||||||||||||||||||| ||  ||| |||||| |||||| ||||||||||||||||||||||||||    
T  22589479 gagacatgacattgctatgcatgaccttttgaactctatgtaaaag-tcaacagcctctggtgctaggaaaccgaaagtgtcaaaaa 22589394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 39671319 - 39671185
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaac-aaatggt 116  Q
    |||||||| ||||||||  ||| ||||||| ||| ||||||||||  ||| | |||| |||||| ||||||||| |||||| ||| |||||  |||| ||    
T  39671319 ctaggagacatgacatttttattcatgacccttttaactctacgtaaaaggttaacaacctctggtgctaggaagccgaaaatgtaaaaaaataaattgt 39671220  T
Q  117 ataaaagcatgttgattgtcaaaacacgttttctc 151  Q
    |||||| |||||| |||||||||||||| ||||||    
T  39671219 ataaaaacatgttaattgtcaaaacacgctttctc 39671185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 43823952 - 43824053
Alignment:
Q  21 ggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataa 120  Q
    ||||| ||||||||| ||| ||||||| ||||||||||| ||| ||| |||| | ||||| |||| ||||| || |||||||||||| ||||||||||||    
T  43823952 ggagacatgacattgctatgcatgaccatttgaactctatgtgaaaggtcaatagcctctaatgcaaggaagccaaaagtgtcaaaagcaaatggtataa 43824051  T
Q  121 aa 122  Q
    ||    
T  43824052 aa 43824053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 4073573 - 4073660
Alignment:
Q  96 aaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    |||||||||||  ||||| |||||||| |||||||||||  ||||||||||||||| |||||||||| |||  |||| ||||||||||    
T  4073573 aaagtgtcaaatgcaaattgtataaaatcatgttgattggtaaaacacgttttctcttgtttgaccactttgtttgatgcaactttta 4073660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 10189568 - 10189668
Alignment:
Q  83 tgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttt 182  Q
    ||||||||| || ||| |||||||  |||||| ||||||| |||||||||||||| |||| | |||||| |||||||| | |||| ||| ||||||||||    
T  10189568 tgctaggaagccaaaaatgtcaaatgcaaatgatataaaaacatgttgattgtcagaacatgctttctcttgtttgactactttaattggcgcaactttt 10189667  T
Q  183 a 183  Q
    |    
T  10189668 a 10189668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 185
Target Start/End: Complemental strand, 8540473 - 8540357
Alignment:
Q  69 tcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttac 168  Q
    |||||| ||||||||| ||| ||   ||||||||||||  || |||  |||||| ||||| |||||| | ||||| |||||| ||||||||| |||||      
T  8540473 tcaacaacctctgatgttagaaagttgaaagtgtcaaatgcagatgacataaaaacatgtcgattgttagaacacattttctaatgtttgactattttgt 8540374  T
Q  169 ttgacgcaacttttaag 185  Q
    |||||||||||||||||    
T  8540373 ttgacgcaacttttaag 8540357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 170
Target Start/End: Complemental strand, 27422195 - 27422140
Alignment:
Q  115 gtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttactt 170  Q
    |||||| ||||||||||||||||||| | ||||||||||||||||| | |||||||    
T  27422195 gtataagagcatgttgattgtcaaaatatgttttctcatgtttgactaatttactt 27422140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 40223543 - 40223476
Alignment:
Q  25 atatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaa 92  Q
    ||||||||||| ||| ||||||||||||||||||| || |||| |||||| |||| | ||||||||||    
T  40223543 atatgacattgttatgcatgaccttttgaactctatgtagaaggtcaacaacctccggtgctaggaaa 40223476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 18804572 - 18804646
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaa 92  Q
    |||||||  ||||||||| ||| |||||||||||||| |||| || |||| |||||| |||||| ||||||||||    
T  18804572 ctaggagtcatgacattgttatgcatgaccttttgaaatctatgtagaaggtcaacagcctctggtgctaggaaa 18804646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 12320200 - 12320275
Alignment:
Q  77 ctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctca 152  Q
    |||| |||||||||| | |||| | ||||||| |||||||| ||||| ||||||||||||  |||||| |||||||    
T  12320200 ctctaatgctaggaagctgaaaatatcaaaaataaatggtacaaaagtatgttgattgtcggaacacgatttctca 12320275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 3821184 - 3821270
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtca 104  Q
    |||||||| ||||||||| ||| ||| ||| ||||||||||| || |||| |||||| |||||| | ||||||  || |||||||||    
T  3821184 ctaggagacatgacattgctatgcattaccctttgaactctatgtagaaggtcaacaacctctggttctaggatgccaaaagtgtca 3821270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 128
Target Start/End: Original strand, 3863286 - 3863387
Alignment:
Q  27 atgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcat 126  Q
    ||||||||| ||| ||  ||| ||||||||||| || |||| |||| | |||||| | ||||||| || ||||||||| |  ||||||| ||||||||||    
T  3863286 atgacattgctatgcactaccctttgaactctatgtagaaggtcaataacctctggtcctaggaagccaaaagtgtcacatgcaaatggaataaaagcat 3863385  T
Q  127 gt 128  Q
    ||    
T  3863386 gt 3863387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 10556361 - 10556296
Alignment:
Q  97 aagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgacca 162  Q
    |||||||||| |||| |  ||||||| |||||||||| ||| || | |||||||||||||||||||    
T  10556361 aagtgtcaaatacaatttatataaaaacatgttgattttcagaatatgttttctcatgtttgacca 10556296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 10950729 - 10950673
Alignment:
Q  95 gaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctc 151  Q
    ||||||||||||   |||||||||||||| ||||| ||||| | |||||||||||||    
T  10950729 gaaagtgtcaaatgtaaatggtataaaagtatgttaattgttagaacacgttttctc 10950673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 10958734 - 10958678
Alignment:
Q  95 gaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctc 151  Q
    ||||||||||||   |||||||||||||| ||||| ||||| | |||||||||||||    
T  10958734 gaaagtgtcaaatgtaaatggtataaaagtatgttaattgttagaacacgttttctc 10958678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 42921658 - 42921801
Alignment:
Q  19 taggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtat 118  Q
    ||||||| ||||||||| ||| ||||||||| ||||||||| || ||||  ||||| |||||| |||||||||||||||||||||| || ||||||||||    
T  42921658 taggagacatgacattgttatgcatgaccttctgaactctatgtagaaggccaacaacctctggtgctaggaaaccgaaagtgtcataagcaaatggtat 42921757  T
Q  119 aaaagcatgttgattgtcaaaacacgttttctcatgtttgacca 162  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||    
T  42921758 aaaagcatgttgattgtcagaacacgttttctcgtgtttgacca 42921801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 27 - 183
Target Start/End: Complemental strand, 37873776 - 37873620
Alignment:
Q  27 atgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcat 126  Q
    ||||||||| | | ||||||| ||||||||||| || |||| |||||| |||||| ||||||||| || |||||||||||| |||||||||||||| |||    
T  37873776 atgacattgttctgcatgaccctttgaactctatgtagaaggtcaacaacctctggtgctaggaagccaaaagtgtcaaaagcaaatggtataaaaacat 37873677  T
Q  127 gttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    ||||||||||| |||||| ||||||||||||| ||| ||| ||||||||||||||||    
T  37873676 gttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcaactttta 37873620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 8100512 - 8100692
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||| ||| ||||||||||||| |||||   ||| |||||||||| |||| |||||| |||||  ||  |||||   |||||||||| ||||||||||||    
T  8100512 ctagaagacatgacattgatatgcatgaatctttaaactctacgtagaaggtcaacaacctctagtggaaggaagttgaaagtgtcacaaacaaatggta 8100611  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    |||||||||||  ||||||| |||||||||||||||||||||||||||||||||| ||| | |||| |||||| |||||||    
T  8100612 taaaagcatgtaaattgtcacaacacgttttctcatgtttgaccattttacttgatgcagcgtttagggatgcatgtccta 8100692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 38875598 - 38875738
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| | ||||||| ||| |||||||||||||||||||||| |||| ||| || |||||| ||||||||| | |||||||||||||||||||||||    
T  38875598 ctaggagacaagacattgttatgcatgaccttttgaactctacgtagaaggtcagcagcctctggtgctaggaagctgaaagtgtcaaaaacaaatggta 38875697  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttg 158  Q
     |||| |||||||||||||| |||||  |||||||||||||    
T  38875698 caaaaacatgttgattgtcagaacacactttctcatgtttg 38875738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 13167057 - 13166899
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||  ||||| ||| ||| ||| |||| |||||| || |||| ||||||  ||||||||||||||| ||||||||||||||| |||||||||    
T  13167057 ctaggagacataccattgctatgcataaccctttggactctatgtagaaggtcaacagtctctgatgctaggaagccgaaagtgtcaaaagcaaatggta 13166958  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgca 176  Q
    |||||||||||||||||||| |||||| ||||||||||||  ||| ||| |||||||||    
T  13166957 taaaagcatgttgattgtcagaacacgctttctcatgtttagccactttgcttgacgca 13166899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 35310408 - 35310573
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| || |||||||||| ||  ||| |||| |||||| || |||| | |||| |||||||||| ||||| ||||||||||||||| || ||||||    
T  35310408 ctaggagacataacattgatatgcaaaaccctttggactctatgtagaaggttaacagcctctgatgccaggaagccgaaagtgtcaaaagcagatggta 35310507  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    |||||||||||||||||||| |||| | ||||||||||||| ||| ||| ||||||||| ||||||    
T  35310508 taaaagcatgttgattgtcagaacatgctttctcatgtttggccactttgcttgacgcatctttta 35310573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 55 - 183
Target Start/End: Original strand, 27336690 - 27336818
Alignment:
Q  55 ctctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatg 154  Q
    ||||| || |||| |||||  |||||||||||||||| ||  ||||||||||| ||||||||||||||| ||||||||||||| |||||| |||||||||    
T  27336690 ctctatgtagaaggtcaactgcctctgatgctaggaagccacaagtgtcaaaagcaaatggtataaaagtatgttgattgtcagaacacgatttctcatg 27336789  T
Q  155 tttgaccattttacttgacgcaactttta 183  Q
    |||||||| ||| ||||||||||||||||    
T  27336790 tttgaccactttgcttgacgcaactttta 27336818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 32269944 - 32269764
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||| ||| ||||||||||||||||  | |  |||| |||||| |||||  |||||||||| ||||||| |||||| |||||||||    
T  32269944 ctaggagacatgacattgctatgcatgaccttttgaacttcatgcagaaggtcaacaacctctagtgctaggaaatcgaaagtatcaaaagcaaatggta 32269845  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    ||||||| |||||||||||| |||||  ||||||||||||||||| |||  |||| ||| |||||| || ||| |||||||    
T  32269844 taaaagcgtgttgattgtcagaacacactttctcatgtttgaccactttggttgatgcagcttttagggttgcatgtccta 32269764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 15292172 - 15292008
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    ||||||||| |||||||| ||| |||||||||||||||| |  || ||||||||| | |||||  |||||| ||||  ||||||| |||||||||| |||    
T  15292172 ctaggagatgtgacattgctatgcatgaccttttgaactttt-gtagaagatcaataacctctagtgctagaaaactaaaagtgtaaaaaacaaattgta 15292074  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    ||||| |||||||||||||| |||||||||||||||||||| ||| |||  ||||||| |||||||    
T  15292073 taaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgtttgacgccactttta 15292008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 30 - 183
Target Start/End: Complemental strand, 25663167 - 25663014
Alignment:
Q  30 acattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgtt 129  Q
    |||||||||| ||| ||| |||| |||||| || ||||||||||| | |||||||||||||| | ||||||||||||| |||||||||||||| ||||||    
T  25663167 acattgatatgcataaccctttggactctatgtagaagatcaacaacttctgatgctaggaagctgaaagtgtcaaaagcaaatggtataaaaacatgtt 25663068  T
Q  130 gattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    |||| ||| |||||| ||||||||||||| ||| |||  |||| ||| ||||||    
T  25663067 gattatcagaacacgctttctcatgtttggccactttgtttgatgcagctttta 25663014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 64 - 183
Target Start/End: Complemental strand, 33692156 - 33692037
Alignment:
Q  64 gaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccat 163  Q
    |||| ||||||  ||||||||||| ||| ||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||| ||||||||| |||     
T  33692156 gaaggtcaacagtctctgatgctaagaagccgaaagtgtcaaaagcaaatggtacaaaagcatgttgattgtcataacacgttttgtcatgtttggccac 33692057  T
Q  164 tttacttgacgcaactttta 183  Q
    ||| ||||||||| ||||||    
T  33692056 tttgcttgacgcagctttta 33692037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 41 - 183
Target Start/End: Complemental strand, 26212707 - 26212565
Alignment:
Q  41 catgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaa 140  Q
    |||||| |||||||||||| || |||| | || | |||||| ||||| ||||| ||||| || ||||||||||||||||||||||||||||| |||| ||    
T  26212707 catgacattttgaactctatgtagaaggttaatagcctctggtgctaagaaactgaaagggtaaaaaacaaatggtataaaagcatgttgatcgtcagaa 26212608  T
Q  141 cacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
     ||| ||||||||||||| ||| ||| ||||||||||||||||    
T  26212607 tacgctttctcatgtttggccactttgcttgacgcaactttta 26212565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 49 - 183
Target Start/End: Original strand, 43129525 - 43129659
Alignment:
Q  49 tttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgtttt 148  Q
    ||||||||||  || |||| |||| | | |||| || ||||||||||||| |||||||| ||||||||| |||| |||||||||||||| ||||||||||    
T  43129525 tttgaactctctgtagaaggtcaaaaacatctggtgttaggaaaccgaaaatgtcaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 43129624  T
Q  149 ctcatgtttgaccattttacttgacgcaactttta 183  Q
    |||||||||||||| ||| ||||||||| ||||||    
T  43129625 ctcatgtttgaccactttgcttgacgcatctttta 43129659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 69 - 182
Target Start/End: Original strand, 35455967 - 35456080
Alignment:
Q  69 tcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttac 168  Q
    |||||| |||||| ||||||||| || ||| |||||||| |||| |||||||||||||||||||||| | |||||| |||||||||||||||||||||||    
T  35455967 tcaacatcctctggtgctaggaagccaaaattgtcaaaagcaaaaggtataaaagcatgttgattgttagaacacgctttctcatgtttgaccattttac 35456066  T
Q  169 ttgacgcaactttt 182  Q
    || || ||||||||    
T  35456067 ttaacacaactttt 35456080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 53 - 198
Target Start/End: Original strand, 14423677 - 14423818
Alignment:
Q  53 aactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctca 152  Q
    ||||||| || |||| |||||| |||||||||||||||    ||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||    
T  14423677 aactctatgtagaaggtcaacagcctctgatgctagga----gaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctca 14423772  T
Q  153 tgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    |||| |  || ||| |||||||||  ||||| || ||| |||||||    
T  14423773 tgttcggtcactttgcttgacgcattttttagggttgcctgtccta 14423818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 22188802 - 22188687
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| |||| |||| ||| ||||||||||||||||||| || |||| |||||| |||||| |||||  ||| |||||||||||||||||||| |||    
T  22188802 ctaggagacatgatattgttatgcatgaccttttgaactctatgtagaaggtcaacagcctctggtgctaaaaaatcgaaagtgtcaaaaacaaatagta 22188703  T
Q  118 taaaagcatgttgatt 133  Q
    ||||| ||||||||||    
T  22188702 taaaatcatgttgatt 22188687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 50 - 173
Target Start/End: Original strand, 34335329 - 34335452
Alignment:
Q  50 ttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttc 149  Q
    |||||||||| || |||| |||||| |||||| ||  || ||  ||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||    
T  34335329 ttgaactctatgtagaaggtcaacagcctctggtgtcagaaagtcgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaggacacgctttc 34335428  T
Q  150 tcatgtttgaccattttacttgac 173  Q
    ||||||||| || |||| ||||||    
T  34335429 tcatgtttggcccttttgcttgac 34335452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 87 - 198
Target Start/End: Complemental strand, 3114241 - 3114130
Alignment:
Q  87 aggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaagg 186  Q
    |||||||| ||||||||||||||||||||||||||| |||||||| ||||| |||| | ||||||||||||| ||| |||  |||| |||||||||| ||    
T  3114241 aggaaaccaaaagtgtcaaaaacaaatggtataaaaacatgttgactgtcagaacatgctttctcatgtttggccactttgtttgatgcaacttttaggg 3114142  T
Q  187 atgcttgtccta 198  Q
     ||| |||||||    
T  3114141 ctgcctgtccta 3114130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 14723383 - 14723272
Alignment:
Q  26 tatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagca 125  Q
    ||||| |||| ||| |||||| ||||||||| || ||  ||| |||||| ||||||||||||  ||||| ||||||| ||||||||||| ||||||||||    
T  14723383 tatgatattgttatgcatgacattttgaactttaagtataaggtcaacaacctctgatgctaaaaaaccaaaagtgtaaaaaacaaatgatataaaagca 14723284  T
Q  126 tgttgattgtca 137  Q
    ||||||||||||    
T  14723283 tgttgattgtca 14723272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 85 - 184
Target Start/End: Complemental strand, 32230587 - 32230488
Alignment:
Q  85 ctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaa 184  Q
    |||| ||||| |||||||| ||  || ||||||||||||| |||||||||||| ||||| ||||||||||||||  || ||| |||||||||||||||||    
T  32230587 ctagaaaaccaaaagtgtcgaacgcagatggtataaaagcttgttgattgtcagaacacattttctcatgtttggtcactttgcttgacgcaacttttaa 32230488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 43115525 - 43115440
Alignment:
Q  97 aagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    ||||||||||| |||||| ||| ||||||||||||||||||||||||| |||||||| |||||||  |||| || ||||||||||||    
T  43115525 aagtgtcaaaagcaaatgctatgaaagcatgttgattgtcaaaacacgctttctcatatttgaccgcttta-tttacgcaactttta 43115440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 430562 - 430686
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| || |||||  ||| ||| ||| |||| | |||| || |||| |||||  |||||||||||| |||  | |||||||||||| |||||||||    
T  430562 ctaggagacataacattactatgcataaccctttggaatctatgtagaaggtcaactgcctctgatgctatgaagacaaaagtgtcaaaagcaaatggta 430661  T
Q  118 taaaagcatgttgattgtcaaaaca 142  Q
    |||||||||||||||||||| ||||    
T  430662 taaaagcatgttgattgtcagaaca 430686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 9829421 - 9829361
Alignment:
Q  96 aaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtt 156  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||| |||| |||||||    
T  9829421 aaagtgtcaaatataaatggtataaaagcatgttgattgtcaaaacacattttatcatgtt 9829361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 8858969 - 8859034
Alignment:
Q  111 aatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgca 176  Q
    |||| ||||||| |||||||||||||| |||||| ||||||||||||||| | ||| |||||||||    
T  8858969 aatgatataaaaacatgttgattgtcagaacacgctttctcatgtttgactactttgcttgacgca 8859034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 26577469 - 26577395
Alignment:
Q  96 aaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttactt 170  Q
    ||||||| ||| |||||| |||||||| ||||||||| |||  |||||  ||||| |||||||||||||||||||    
T  26577469 aaagtgtgaaacacaaattgtataaaaacatgttgatagtcggaacacactttcttatgtttgaccattttactt 26577395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 7143764 - 7143805
Alignment:
Q  116 tataaaagcatgttgattgtcaaaacacgttttctcatgttt 157  Q
    ||||||| |||||||||||| |||||||||||||||||||||    
T  7143764 tataaaaacatgttgattgttaaaacacgttttctcatgttt 7143805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 170
Target Start/End: Original strand, 14436541 - 14436609
Alignment:
Q  99 gtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttactt 170  Q
    |||||||||||||||| ||||||| ||||||||||   | |||||||||| ||||||||| ||| |||||||    
T  14436541 gtgtcaaaaacaaatgatataaaaacatgttgatt---agaacacgttttttcatgtttggccactttactt 14436609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 13307394 - 13307470
Alignment:
Q  96 aaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttga 172  Q
    |||||||| ||  |||| ||||||||| ||||||||| || | || ||  |||||||||||||||||||||||||||    
T  13307394 aaagtgtcgaacgcaaaaggtataaaaacatgttgatagtaagaatacactttctcatgtttgaccattttacttga 13307470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 41343533 - 41343473
Alignment:
Q  70 caacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttg 130  Q
    ||||| |||||| |||||| ||||||||  |||| ||||||||||||||||||||| ||||    
T  41343533 caacaacctctggtgctagaaaaccgaatatgtcgaaaacaaatggtataaaagcacgttg 41343473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 2566242 - 2566201
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactcta 59  Q
    |||||||| ||||||||| ||| |||||||||||||||||||    
T  2566242 ctaggagacatgacattgctatgcatgaccttttgaactcta 2566201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 23023555 - 23023591
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaa 54  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  23023555 ctaggagacatgacattgatatgcatgaccttttgaa 23023591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 103066 - 103245
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| | ||||||| ||| ||||||||||||| ||| | || |||| |||||| |||||| ||||||||||||||||||||||||| |||||||||    
T  103066 ctaggagacacgacattgttatgcatgaccttttgagctcgatgtagaaggtcaacagcctctggtgctaggaaaccgaaagtgtcaaaagcaaatggta 103165  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    ||||||||||||||||||| | ||||| |||||| |||||| |||| |||||||||||| |||| | || ||| |||||||    
T  103166 taaaagcatgttgattgtc-agacacgctttctcgtgtttggccatcttacttgacgcagctttgagggctgcctgtccta 103245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 30940879 - 30940721
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||| ||||||||||| ||| ||||||||||||||||||| || |||      || |||| | |||||||||| |||||||||||||| ||| |||||    
T  30940879 ctaggatatatgacattgttatgcatgaccttttgaactctatgtagaa------cagcctcaggtgctaggaaatcgaaagtgtcaaaagcaa-tggta 30940787  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    |||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||    
T  30940786 taaaagcatgttgattgtcagaacacgctttctcatgtttgaccactttacttgacgcaactttta 30940721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 600839 - 600674
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||| | ||| ||||||||||||||||||| || |||| |||||| |||||| || |||||||||||||||| ||||| |||||||||    
T  600839 ctaggagacatgacatagttatacatgaccttttgaactctatgtagaaggtcaacaacctctggtgttaggaaaccgaaagtgacaaaagcaaatggta 600740  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    |||||||||||| ||||| | ||||||||||||||||||||  || ||| ||||||  ||||||||    
T  600739 taaaagcatgttaattgttagaacacgttttctcatgtttggtcactttgcttgacataactttta 600674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 54 - 198
Target Start/End: Original strand, 53619582 - 53619726
Alignment:
Q  54 actctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcat 153  Q
    |||||| || |||| |||||  ||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  53619582 actctatgtagaaggtcaactgcctctgatgctaggaagtcaaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcagaacacgttttctcat 53619681  T
Q  154 gtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    ||||| ||| ||| ||||||||| |||||| || ||| |||||||    
T  53619682 gtttggccactttgcttgacgcagcttttagggttgcctgtccta 53619726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 34107843 - 34107676
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| || |||||| ||| |||||| |||||||||||| || |||| |||||| |||||| |||||||||| ||||||||||||||||||||||||    
T  34107843 ctaggagacataacattgttatgcatgactttttgaactctatgtagaaggtcaacagcctctggtgctaggaaatcgaaagtgtcaaaaacaaatggta 34107744  T
Q  118 taaaagcatgttgattgtc--aaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    ||||| |||||||||| ||  || ||||||||||||||||||| ||| ||   ||||||||| |||||    
T  34107743 taaaaacatgttgattatctgaacacacgttttctcatgtttggccacttcgtttgacgcaattttta 34107676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 56462252 - 56462089
Alignment:
Q  19 taggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtat 118  Q
    ||||||| |||||||||  || ||||| | ||||||||||| || |||| |||||| |||||| |||||||||||| |||||||| ||||||||||||||    
T  56462252 taggagacatgacattgtcatgcatgatcctttgaactctatgtagaaggtcaacaacctctggtgctaggaaaccaaaagtgtctaaaacaaatggtat 56462153  T
Q  119 aaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    |||| |||||||||||||| |||||| ||| ||||||||| ||| |||  |||||||||||||||    
T  56462152 aaaaacatgttgattgtcagaacacgctttatcatgtttg-ccactttgtttgacgcaactttta 56462089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 27 - 198
Target Start/End: Original strand, 132354 - 132525
Alignment:
Q  27 atgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcat 126  Q
    ||||||||| ||| | ||||| ||| ||||||  || |||  ||||||  |||||||  ||||||||||||||||| |||||||||||||||||||||||    
T  132354 atgacattgttatgcttgaccctttaaactctgtgtagaatgtcaacaatctctgatattaggaaaccgaaagtgtaaaaaacaaatggtataaaagcat 132453  T
Q  127 gttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    ||||||||||| |||||| ||||||||||||  ||||||| ||||||||| |||||| || ||| |||||||    
T  132454 gttgattgtcagaacacgatttctcatgttttgccattttgcttgacgcagcttttagggctgcctgtccta 132525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 26521448 - 26521628
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||| | ||||||||| ||  ||||||| |||||||| || || |||| |||||| |||||| |||||||||||| |||||||  ||| || ||| ||    
T  26521448 ctaggatacatgacattgctacgcatgaccctttgaactgtatgtagaaggtcaacagcctctggtgctaggaaaccaaaagtgttgaaagcatatgata 26521547  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    |||||||||||||||||||| |||||||||| ||||||||  ||| |||  ||||||||||||||| || || ||||||||    
T  26521548 taaaagcatgttgattgtcataacacgttttttcatgtttagccactttgtttgacgcaacttttagggttgtttgtccta 26521628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 50001073 - 50000907
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| || |||||| ||| ||| ||| |||| ||| || || |||| |||||  ||||||||||||| || || |||||||||||| ||||| |||    
T  50001073 ctaggagacataacattgctatgcataaccctttggactatatgtagaaggtcaactgcctctgatgctagaaagccaaaagtgtcaaaagcaaattgta 50000974  T
Q  118 t-aaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    | ||||||||||||||||||| |||||| ||||||||||||||||| ||| ||||||||| ||||||    
T  50000973 ttaaaagcatgttgattgtcagaacacgctttctcatgtttgaccactttgcttgacgcagctttta 50000907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 41 - 150
Target Start/End: Complemental strand, 50483320 - 50483211
Alignment:
Q  41 catgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaa 140  Q
    ||||||||||||||||||| || |||| |||||| |||||| ||||||||||||||||||||| ||| |||||||||||||| |||||||||||||| ||    
T  50483320 catgaccttttgaactctatgtagaaggtcaacaacctctggtgctaggaaaccgaaagtgtcgaaagcaaatggtataaaatcatgttgattgtcagaa 50483221  T
Q  141 cacgttttct 150  Q
     ||| |||||    
T  50483220 gacgctttct 50483211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 49 - 198
Target Start/End: Original strand, 31847078 - 31847227
Alignment:
Q  49 tttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgtttt 148  Q
    |||| |||||| || |||| |||||  | |||||||||||||| || |||||||||||| ||||||||| |||| |||||||| ||||| |||| | |||    
T  31847078 tttggactctatgtagaaggtcaaccgcttctgatgctaggaagccaaaagtgtcaaaagcaaatggtaaaaaaacatgttgactgtcagaacatggttt 31847177  T
Q  149 ctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    |||||||||||||| ||| ||||||||| |||||| || ||| |||||||    
T  31847178 ctcatgtttgaccactttgcttgacgcagcttttagggctgcctgtccta 31847227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 53170474 - 53170607
Alignment:
Q  19 taggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtat 118  Q
    ||||||| ||||||||| ||| ||||||||||||||||||| || |||| |||||| |||||| |||||| |||||||||||||||||| |||||         
T  53170474 taggagacatgacattgctatgcatgaccttttgaactctatgtagaaggtcaacagcctctggtgctagcaaaccgaaagtgtcaaaagcaaat----- 53170568  T
Q  119 aaaagcatgttgattgtcaaaacacgttttctcatgtttg 158  Q
      ||||||||||| ||||| |||||| |||||||||||||    
T  53170569 -caagcatgttgactgtcagaacacgctttctcatgtttg 53170607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 49 - 144
Target Start/End: Complemental strand, 7536687 - 7536592
Alignment:
Q  49 tttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacg 144  Q
    ||||||||||| || |||| |||||| |||||| ||||||||||| |||| |||||||||||||| |||||||| |||||||||||||||||||||    
T  7536687 tttgaactctatgtagaaggtcaacaacctctggtgctaggaaactgaaattgtcaaaaacaaattgtataaaaacatgttgattgtcaaaacacg 7536592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 64 - 198
Target Start/End: Complemental strand, 12918473 - 12918339
Alignment:
Q  64 gaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccat 163  Q
    |||| ||||||  |||||||||||||||  ||||||||||||||  |||| |||||||||  |||||||||||| |||||| ||||| |||||||||||     
T  12918473 gaaggtcaacaatctctgatgctaggaagtcgaaagtgtcaaaagtaaatagtataaaagtgtgttgattgtcagaacacgatttcttatgtttgaccac 12918374  T
Q  164 tttacttgacgcaacttttaaggatgcttgtccta 198  Q
    |||  ||||||||||||||| || || ||||||||    
T  12918373 tttgtttgacgcaacttttagggttgtttgtccta 12918339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 101 - 182
Target Start/End: Original strand, 23255747 - 23255828
Alignment:
Q  101 gtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttt 182  Q
    ||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||| ||| ||| |||||||||||||||    
T  23255747 gtcaaaaacaaatggtataaaagcatgttaattgtcagaacacgctttctcatgtttggccactttgcttgacgcaactttt 23255828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 50463090 - 50462925
Alignment:
Q  21 ggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataa 120  Q
    ||||| ||| ||||| ||| |||| || ||| |||||||||| |||| ||||||  ||||| ||  |||||| | |||||||||||| |||||||||| |    
T  50463090 ggagacatggcattgttatgcatggccctttaaactctacgtagaaggtcaacagtctctggtgtaaggaaatcaaaagtgtcaaaagcaaatggtatga 50462991  T
Q  121 aagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaagg 186  Q
    ||||||||||||||||  || ||  |||||||||||||  ||| || |||||||||||||||||||    
T  50462990 aagcatgttgattgtcggaagacactttctcatgtttggtcatcttgcttgacgcaacttttaagg 50462925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 55933548 - 55933444
Alignment:
Q  79 ctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaac 178  Q
    |||||||||||||  |||||||||||||| ||||||||||||||||||||||||||| | ||||   ||||||||||||| ||| |||  ||||||||||    
T  55933548 ctgatgctaggaagtcgaaagtgtcaaaagcaaatggtataaaagcatgttgattgttagaacaaactttctcatgtttggccactttgtttgacgcaac 55933449  T
Q  179 tttta 183  Q
    |||||    
T  55933448 tttta 55933444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 3329956 - 3330075
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| || |||||| ||| ||| ||| |||| |||||| || |||| |||||  |||||||||||||||| || |||||||||||| ||||| |||    
T  3329956 ctaggagacataacattgctatgcataaccctttggactctatgtagaaggtcaactgcctctgatgctaggaagccaaaagtgtcaaaagcaaatagta 3330055  T
Q  118 taaaagcatgttgattgtca 137  Q
    ||||||||||||||||||||    
T  3330056 taaaagcatgttgattgtca 3330075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 22 - 165
Target Start/End: Original strand, 25504259 - 25504402
Alignment:
Q  22 gagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaa 121  Q
    |||| ||||||||  ||| ||||||||||| |||||||  |  ||| ||||||  ||||  |||||||||||| ||| |||||||| |||| ||||||||    
T  25504259 gagacatgacattactatgcatgaccttttaaactctatttaaaaggtcaacagtctctagtgctaggaaaccaaaaatgtcaaaagcaaacggtataaa 25504358  T
Q  122 agcatgttgattgtcaaaacacgttttctcatgtttgaccattt 165  Q
    | ||||| |||||| | |||||||||||||||||||||||||||    
T  25504359 aacatgtcgattgttagaacacgttttctcatgtttgaccattt 25504402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 48656981 - 48656892
Alignment:
Q  94 cgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    ||||||||||||||||||||||||||||| ||| ||||||| || |||||  ||||||||||||| ||||||||||||| | ||||||||    
T  48656981 cgaaagtgtcaaaaacaaatggtataaaaacattttgattgacataacacactttctcatgtttgtccattttacttgatgaaactttta 48656892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 6865967 - 6865828
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||| ||| ||| ||| ||||||||||| ||  ||| | |||| | |||  ||||| ||| |  |||||||||||| |||||| ||    
T  6865967 ctaggagacatgacattgctatgcattaccctttgaactctatgtaaaaggttaacaacatctagtgctatgaagctcaaagtgtcaaaagcaaatgata 6865868  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgttt 157  Q
    ||||||||||||||| |||| ||||||||||||| |||||    
T  6865867 taaaagcatgttgatagtcagaacacgttttctcgtgttt 6865828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 43849483 - 43849355
Alignment:
Q  30 acattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgtt 129  Q
    |||||| ||| ||||||| ||||||||||  || ||||||| ||| ||| || | ||||||| || ||||||||||| |||||| |||||||||||||||    
T  43849483 acattgttatgcatgaccatttgaactctttgtagaagatccacaacctttggttctaggaagccaaaagtgtcaaacacaaatagtataaaagcatgtt 43849384  T
Q  130 gattgtcaaaacacgttttctcatgtttg 158  Q
    | || ||  |||||| |||||| ||||||    
T  43849383 ggttatctgaacacgctttctcgtgtttg 43849355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 85 - 183
Target Start/End: Original strand, 16957569 - 16957667
Alignment:
Q  85 ctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    |||| |||| ||||||||||||| ||||||||||| ||||||||||||| ||| | |||  |||||||||||||  |||||| ||  ||||||||||||    
T  16957569 ctagaaaactgaaagtgtcaaaagcaaatggtatataagcatgttgattatcagagcacactttctcatgtttggtcattttgctctacgcaactttta 16957667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 137
Target Start/End: Original strand, 53098404 - 53098500
Alignment:
Q  41 catgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtca 137  Q
    ||||||| ||||||||||| || |||| | |||| ||||||||||||||||||| ||| ||||||||  ||| |||  |||| ||||||||||||||    
T  53098404 catgaccatttgaactctatgtagaaggttaacaacctctgatgctaggaaaccaaaaatgtcaaaaggaaacggttcaaaaacatgttgattgtca 53098500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 4419223 - 4419310
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaa 105  Q
    |||||||| || |||||| ||| ||| ||| ||||||||||| || |||| |||||| |||||||||||| ||| |||||||||||||    
T  4419223 ctaggagacataacattgttatgcataaccctttgaactctatgtagaaggtcaacaacctctgatgctacgaagccgaaagtgtcaa 4419310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 162
Target Start/End: Complemental strand, 54190989 - 54190859
Alignment:
Q  27 atgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcat 126  Q
    ||||||||| ||| |||| || ||||||||||| ||||||| |||||| |||||||| |||| ||  | |||||||||||| |||     |||||| |||    
T  54190989 atgacattgttatgcatggccctttgaactctatgtggaaggtcaacaacctctgatactagaaagtcaaaagtgtcaaaagcaa-----ataaaaacat 54190895  T
Q  127 gttgattgtcaaaacacgttttctcatgtttgacca 162  Q
    ||  ||||||| || | |||||||||||||||||||    
T  54190894 gtaaattgtcagaatatgttttctcatgtttgacca 54190859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 183
Target Start/End: Complemental strand, 46441005 - 46440871
Alignment:
Q  49 tttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgtttt 148  Q
    |||| |||||| || |||| ||| || | |||||||||||||| ||||||||||||||| |||||| ||||||| | |||| ||||| | |||||  |||    
T  46441005 tttggactctatgtagaaggtcagcagcttctgatgctaggaagccgaaagtgtcaaaagcaaatgatataaaaacgtgttaattgttagaacacacttt 46440906  T
Q  149 ctcatgtttgaccattttacttgacgcaactttta 183  Q
     | ||||||||||| |||  ||||||  |||||||    
T  46440905 tttatgtttgaccactttgtttgacgttactttta 46440871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 16955420 - 16955491
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctagg 89  Q
    |||||||| ||||||||| ||| ||||||||||||||||||| || |||| ||| || |||||| |||||||    
T  16955420 ctaggagacatgacattgctatgcatgaccttttgaactctatgtagaaggtcagcaacctctggtgctagg 16955491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 24719972 - 24720039
Alignment:
Q  96 aaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacg-ttttctcatgtttgacca 162  Q
    ||||||||||| ||||||| ||||||| |||||||||||||| ||| || |||| |||||||||||||    
T  24719972 aaagtgtcaaacacaaatgatataaaaacatgttgattgtcagaacgcgtttttatcatgtttgacca 24720039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 183
Target Start/End: Original strand, 12053432 - 12053538
Alignment:
Q  77 ctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgca 176  Q
    ||||| ||||||||||  ||||| ||| ||| |||||| ||||||| | | |||||||| | |||||| ||||||||||||||| | |||  ||||||||    
T  12053432 ctctggtgctaggaaattgaaagagtcgaaagcaaatgatataaaaacgttttgattgttagaacacgatttctcatgtttgacaactttgtttgacgca 12053531  T
Q  177 actttta 183  Q
     ||||||    
T  12053532 gctttta 12053538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 34536996 - 34536939
Alignment:
Q  101 gtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttg 158  Q
    |||||| |||||| ||||||||  ||||||||||||| |||||||||| |||||||||    
T  34536996 gtcaaacacaaatagtataaaaatatgttgattgtcataacacgttttttcatgtttg 34536939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 38535707 - 38535607
Alignment:
Q  27 atgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcat 126  Q
    ||||||||| ||| ||||||  ||||||||||| || || | | |||| |||||| |||||||||  | |||||||||||  |||||||||||| |||||    
T  38535707 atgacattgctatgcatgactctttgaactctatgtagagggtgaacaacctctggtgctaggaagtcaaaagtgtcaaatgcaaatggtataagagcat 38535608  T
Q  127 g 127  Q
    |    
T  38535607 g 38535607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 747893 - 747812
Alignment:
Q  41 catgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaa 122  Q
    ||||||||||| ||||||| || |||| |||||| ||||||||  || ||||||  || | |||||| ||||||||||||||    
T  747893 catgaccttttaaactctatgtagaaggtcaacaacctctgatattaagaaaccagaaatatcaaaagcaaatggtataaaa 747812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 11562904 - 11562976
Alignment:
Q  64 gaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtc 136  Q
    ||||||||||| ||||   || ||| ||||||||| |||| |||  ||||| |||||||||||||||||||||    
T  11562904 gaagatcaacaacctcgagtgttagaaaaccgaaaatgtctaaagtaaatgatataaaagcatgttgattgtc 11562976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 45386116 - 45386028
Alignment:
Q  110 aaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    |||||||||||||  |  |||||||||| |||||| ||||| ||||||||||| ||| ||||||  | |||||| || ||| |||||||    
T  45386116 aaatggtataaaaagaaattgattgtcagaacacgctttcttatgtttgaccactttccttgacttagcttttagggttgcatgtccta 45386028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 45760883 - 45760839
Alignment:
Q  116 tataaaagcatgttgattgtcaaaacacgttttctcatgtttgac 160  Q
    |||||||  |||||||||||||||||||| |||||||| ||||||    
T  45760883 tataaaaatatgttgattgtcaaaacacgctttctcatctttgac 45760839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 33210 - 33389
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| || | |||| ||| ||||||||||||||||||| || |||| |||||| |||||| || ||||||||||||| ||||||||  ||||||||    
T  33210 ctaggagacataaaattgctatgcatgaccttttgaactctatgtagaaggtcaacaacctctggtgttaggaaaccgaaaatgtcaaaagtaaatggta 33309  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    ||||| |||||||||||||| |||||| ||||||||||||  ||| ||| ||||| || || ||||||| ||| |||||||    
T  33310 taaaaacatgttgattgtcagaacacgctttctcatgtttagccactttgcttgatgccac-tttaaggttgcctgtccta 33389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 27 - 196
Target Start/End: Original strand, 10330 - 10502
Alignment:
Q  27 atgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcat 126  Q
    ||||||||| ||| |||| || ||| |||||||  | |||| |||||| |||||| ||||||||| ||  ||||||||||| ||||||||||||||||||    
T  10330 atgacattgttatgcatggccctttcaactctat-tagaaggtcaacaacctctggtgctaggaagccacaagtgtcaaaagcaaatggtataaaagcat 10428  T
Q  127 g----ttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtcc 196  Q
    |    |||||||||| ||||||  || ||||||||| |||||||||||||||||||||||| || |||||||||    
T  10429 gttgattgattgtcagaacacgcattatcatgtttggccattttacttgacgcaacttttagggctgcttgtcc 10502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 22 - 183
Target Start/End: Original strand, 7567 - 7727
Alignment:
Q  22 gagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaa 121  Q
    |||| |||||||| |||| ||||||||||||||| ||| |   ||| ||||||  |||||  |||||||||| ||||||||||||| |||||||| ||||    
T  7567 gagacatgacatt-atatgcatgaccttttgaacgctatgcaaaaggtcaacaatctctggagctaggaaactgaaagtgtcaaaagcaaatggtttaaa 7665  T
Q  122 agcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    | |||||||||||| | |||||| |||||||||||| || | | || |||||||||||||||    
T  7666 atcatgttgattgtgagaacacgctttctcatgtttaactactctatttgacgcaactttta 7727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 86 - 183
Target Start/End: Complemental strand, 47618 - 47521
Alignment:
Q  86 taggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    ||||||| ||||||||| |||| ||||||||||||||  ||||| | ||||| ||||| |||||||||||||| ||||||||||||||||||||||||    
T  47618 taggaaatcgaaagtgttaaaagcaaatggtataaaaatatgttaactgtcagaacacattttctcatgtttggccattttacttgacgcaactttta 47521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1768 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 331 - 151
Alignment:
Q  18 ctaggagatatgacattgatatccatgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggta 117  Q
    |||||||| ||||||||| |||  ||||| ||||||||| || |  |||| |||||| ||| || | |||| ||||| ||||||||||| ||||||||||    
T  331 ctaggagacatgacattgctatgtatgactttttgaactttatgcagaaggtcaacaacctttggtactagaaaaccaaaagtgtcaaacacaaatggta 232  T
Q  118 taaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    ||||||||||||||| |||| ||| |  | ||||||||||| ||| ||| |||||||||  ||||| || ||| |||||||    
T  231 taaaagcatgttgatggtcataacccactgtctcatgtttggccactttgcttgacgcagtttttagggctgcctgtccta 151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 94 - 195
Target Start/End: Original strand, 49447 - 49548
Alignment:
Q  94 cgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttg 193  Q
    |||||||||||||| ||||||||||||||||| ||||||||||| |||||| |||||||  |||||||| |||  |||| |||||||||| || ||||||    
T  49447 cgaaagtgtcaaaagcaaatggtataaaagcacgttgattgtcagaacacgatttctcacatttgaccactttgtttgatgcaacttttagggctgcttg 49546  T
Q  194 tc 195  Q
    ||    
T  49547 tc 49548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0493 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 8598 - 8525
Alignment:
Q  83 tgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaacacgttttctcatgtt 156  Q
    |||||||||||| ||||||| |||  |||||||||||||| |||||||||||||| |||| |||||||||||||    
T  8598 tgctaggaaaccaaaagtgttaaacgcaaatggtataaaaacatgttgattgtcagaacatgttttctcatgtt 8525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 16191 - 16259
Alignment:
Q  115 gtataaaagcatgttgattgtcaaaacacgttttctcatgtttgaccattttacttgacgcaactttta 183  Q
    |||||||| |||||| ||||||| |||| ||||||||||||||| |||||||  |||||||| ||||||    
T  16191 gtataaaaacatgtttattgtcagaacatgttttctcatgtttggccattttgtttgacgcagctttta 16259  T

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Target: scaffold0224 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 198
Target Start/End: Complemental strand, 18488 - 18332
Alignment:
Q  41 catgaccttttgaactctacgtggaagatcaacaccctctgatgctaggaaaccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaaaa 140  Q
    ||||||| ||| ||||||| || |||| | ||||  ||||  |||| ||||| | |||||||||||| || |||  |||||| |||||||||||| | ||    
T  18488 catgaccctttaaactctatgtagaaggttaacaatctctactgcttggaaatcaaaagtgtcaaaagcagatgacataaaaacatgttgattgtgagaa 18389  T
Q  141 cacgttttctcatgtttgaccattttacttgacgcaacttttaaggatgcttgtccta 198  Q
    |||| ||||||||||||| ||  |||  |||| |||||||||| || || ||||||||    
T  18388 cacg-tttctcatgtttggccgctttgtttgatgcaacttttagggttgtttgtccta 18332  T

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