View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1924_low_3 (Length: 396)
Name: NF1924_low_3
Description: NF1924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1924_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 3017521 - 3017142
Alignment:
| Q |
1 |
acacattttgcattcactacagacaacaacaacaattacaattactgcagcttctagtgatagattcatattaaattcaacccataaacaatgaacaatg |
100 |
Q |
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| T |
3017521 |
acacattttgcattcactacagacaacaacaacaattacaattactgcagcttctagtgatagattcatattaaattcaacccataaacaatgaacaatg |
3017422 |
T |
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| Q |
101 |
atgatatagttcattaaaattcataaccatatggaacaccaaccccaccaatcggtcgaaagcagattcttcggtataagaatcttaagatgatatcatg |
200 |
Q |
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| T |
3017421 |
atgatatagttcattaaaattcataaccatatggaacaccaaccctaccaatcggtcgaaagcagattcttcggtataagaatcttaagatgatatcatg |
3017322 |
T |
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| Q |
201 |
tatgactataaaaaattgctattcgagaaaatgcccaagtcccacatctaaacattgcttacaaagtttgggtaatcctcaccttacaagtcagttttgt |
300 |
Q |
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| T |
3017321 |
tatgactataaaaaattgctattcgagaaaatgcccaagtcccacatctaaacattgcttacaaagtttgggtaatcctcaccttacaagtcagttttgt |
3017222 |
T |
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| Q |
301 |
ggggtcaagttcaacgtaaaatctaagaaatgcaaagataaaataccgaagctataatgctaaacctgtagtcatgtatg |
380 |
Q |
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| T |
3017221 |
ggggtcaagttcaacgtaaaatctaagaaatgcaaagataaaataccgaagctataatgctagacctgtagtcatgtatg |
3017142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 128 - 259
Target Start/End: Complemental strand, 3020545 - 3020414
Alignment:
| Q |
128 |
catatggaacaccaaccccaccaatcggtcgaaagcagattcttcggtataagaatcttaagatgatatcatgtatgactataaaaaattgctattcgag |
227 |
Q |
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| T |
3020545 |
catatggaacactagccctaccatttggtcaaaagcagattcttcagtacaagcatcttatgatgatatcatgcatgactataaaaaattgctattcgag |
3020446 |
T |
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| Q |
228 |
aaaatgcccaagtcccacatctaaacattgct |
259 |
Q |
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| T |
3020445 |
aaaatgcccaagtcccacatctaaacattgct |
3020414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 3020596 - 3020542
Alignment:
| Q |
32 |
acaattacaattactgcagcttctagtgatagattcatattaaattcaacccata |
86 |
Q |
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| T |
3020596 |
acaattacaattactgcagcttctagtgaaagattcatattaaattcaactcata |
3020542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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