View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1924_low_4 (Length: 346)
Name: NF1924_low_4
Description: NF1924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1924_low_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 11 - 346
Target Start/End: Complemental strand, 23812303 - 23811968
Alignment:
| Q |
11 |
cagagatgcgatcatatttttgaataatgaatatttgcaacccacactacttcagtatgcaggtgtgtttatttgatatgccatatcctgtctcttgatg |
110 |
Q |
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| T |
23812303 |
cagagaagcgatcatatttttgaataatgaatatttgcaacccacactacttcagtatgcaggtgtgtttatttgatatgccatatcctgtctcttgatg |
23812204 |
T |
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| Q |
111 |
catttggatcttatgttccagggagccaaggggttttgggtttgttcaatttgtggatccagctgatgctgccgatgcgaaatatcacatggatggtcaa |
210 |
Q |
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| T |
23812203 |
catttggatcttatgttccagggagccaaggggttttgggtttgttcaatttgtggatccagctgatgctgccgatgcgaaatatcacatggatggtcaa |
23812104 |
T |
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| Q |
211 |
gttcttcttggtcgtgagttaactgtggtgtttgctgaagaaaacagaaagaaacctcaagaaatgagagcaagagaacgtgggaggtaagaatataggt |
310 |
Q |
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| T |
23812103 |
gttcttcttggccgtgagttaactgtggtgtttgctgaagaaaacagaaagaaacctcaagaaatgagagcaagagaacgtgggaggtaagaatataggt |
23812004 |
T |
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| Q |
311 |
tattgattgtctaataatatcaaagttaatataagt |
346 |
Q |
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| T |
23812003 |
tattgactgtctaataatatcaaagttaatataagt |
23811968 |
T |
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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 142 - 263
Target Start/End: Complemental strand, 37716149 - 37716028
Alignment:
| Q |
142 |
ggttttgggtttgttcaatttgtggatccagctgatgctgccgatgcgaaatatcacatggatggtcaagttcttcttggtcgtgagttaactgtggtgt |
241 |
Q |
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| T |
37716149 |
ggttttggttttattcaatttgtggatcctgcggatgctgctgatgctaaatatcatatggatggtcaagttcttctcggtagggagataactgttgttt |
37716050 |
T |
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| Q |
242 |
ttgctgaagaaaacagaaagaa |
263 |
Q |
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| T |
37716049 |
ttgctgaggaaaatagaaagaa |
37716028 |
T |
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