View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1924_low_7 (Length: 300)
Name: NF1924_low_7
Description: NF1924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1924_low_7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 2377338 - 2377062
Alignment:
| Q |
1 |
aaatgaaagtgaaggtttgagttgagaagggttaatgagtttatttggagggatttgggataaaaggtttgattggagttcgttttgattttgatgaatt |
100 |
Q |
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|||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2377338 |
aaatgaaattgaagtttggagttgagaagggttaatgagtttatttggagggatttgggataaaaggtttgattggagttcgttttaattttgatgaatt |
2377239 |
T |
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| Q |
101 |
aattttgatttgtaccaaaaacgttaatgaattcgttttgatatgttttggaattcgttcttcccgatttgcatagtttaatt-ttttcatgggttttga |
199 |
Q |
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|||||||||||||||||||||| |||||||||||||||| || |||||||||| ||||||||| |||||||||||||||||| ||||| ||| |||||| |
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| T |
2377238 |
aattttgatttgtaccaaaaactttaatgaattcgttttcatttgttttggaaatcgttcttctagatttgcatagtttaatttttttcctggattttga |
2377139 |
T |
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| Q |
200 |
tgatgaaggtgatgaatgttgcttggtttattgataaagatgatgaatgttgct-ggtttgatgatgaacatgatga |
275 |
Q |
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| T |
2377138 |
tgatgaaggtgataaatgttgctggatttattgatgaagatgatgaatgttgctgggtttgatgatgaacatgatga |
2377062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 69 - 275
Target Start/End: Complemental strand, 38120071 - 38119871
Alignment:
| Q |
69 |
ttgattggagttcgttttgattttgatgaattaattttgatttgtaccaaaaacgttaatgaattcgttttgatatgttttggaattcgttcttcccgat |
168 |
Q |
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| T |
38120071 |
ttgattggagttcgttttgattttgatgaattagtcttgatttgtaccaaaaacgttcatgaatt----------tgttttggaattcgttcttcaggat |
38119982 |
T |
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| Q |
169 |
ttgcatagtttaattttttcat---gggttttgatgatgaaggtgatgaatgttgcttggtttattgataaagatgatgaatgttgct-ggtttgatgat |
264 |
Q |
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| T |
38119981 |
ttgcatagttaaattttttttttttgagttttgatgatgaaggtgatgaatgttgctgggtttattgatgaagatgatgaatgttgttgggtttgatgat |
38119882 |
T |
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| Q |
265 |
gaacatgatga |
275 |
Q |
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| T |
38119881 |
gaacacgatga |
38119871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 275
Target Start/End: Original strand, 2380181 - 2380264
Alignment:
| Q |
193 |
gttttgatgatgaaggtgatgaatgttgcttggtttattgataaagatgatgaatgttgctgg-tttgatgatgaacatgatga |
275 |
Q |
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| T |
2380181 |
gttttgataatgaaggtgatgaatttttctaggtatattgatgaagatgatgaatgttgttggatttgatgatgaacatgatga |
2380264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 69 - 275
Target Start/End: Complemental strand, 1560411 - 1560202
Alignment:
| Q |
69 |
ttgattggagttcgttttgattttgatgaattaattttgatttgtaccaaaaacgttaatgaattcgttttgatatgttttggaattcgttcttcccgat |
168 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||| |
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| T |
1560411 |
ttgattggagttcgttttgattttgatgaattagttttgatttgtaccaaaaacgttcatgaattcgttttgatttgttttggaattcgttcttcaggat |
1560312 |
T |
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| Q |
169 |
ttgcatagtttaatt--ttttcatgggttttgatgatgaaggtgatgaatgttgcttggtttattgataaagatgatgaatgttgct-ggtttgatgatg |
265 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||||||| || | ||||||||| |||||||||||||||||| |||||||||||| |
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| T |
1560311 |
ttgcatagtttaattttttttcctgggttttgatgatgaaggtgatgaatgttactggatttattgatgaagatgatgaatgttgctgggtttgatgatg |
1560212 |
T |
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| Q |
266 |
aacatgatga |
275 |
Q |
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| T |
1560211 |
aacatgatga |
1560202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 275
Target Start/End: Original strand, 1561237 - 1561319
Alignment:
| Q |
194 |
ttttgatgatgaaggtgatgaatgttgcttggtttattgataaagatgatgaatgttgct-ggtttgatgatgaacatgatga |
275 |
Q |
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| T |
1561237 |
ttttgatgatgaaggtgatgaatgttgctggatttattgatgaagatgataaatgttgctgggtatgatgatgaatatgatga |
1561319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 272
Target Start/End: Original strand, 42856444 - 42856524
Alignment:
| Q |
193 |
gttttgatgatgaaggtgatgaatgttgcttggtttattgataaagatgatgaatgttgct-ggtttgatgatgaacatga |
272 |
Q |
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| T |
42856444 |
gttttgatgattaatgtgatgaatttttttgggtttattgatgaaaatgatgaatgttgttgggtttgatggtgaacatga |
42856524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 35237498 - 35237420
Alignment:
| Q |
224 |
ggtttattgataaagatgatgaatgttgctgg-tttgatgatgaacatgatg-aggagagatgaatgttaacatttttt |
300 |
Q |
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| T |
35237498 |
ggtttattaatgaagatgatgaatgttgctggatttgatgatgaacatgatgaaggagagatgaatgttaacttttttt |
35237420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 275
Target Start/End: Original strand, 8284799 - 8284881
Alignment:
| Q |
194 |
ttttgatgatgaaggtgatgaatgttgcttggtttattgataaagatgatgaatgttgct-ggtttgatgatgaacatgatga |
275 |
Q |
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|||| |||||||||||||||||||||||| ||||||||| ||||||| ||| ||| | |||||||||||||||||||||| |
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| T |
8284799 |
tttttatgatgaaggtgatgaatgttgctgcatttattgatgaagatgacgaacattgttgggtttgatgatgaacatgatga |
8284881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 272
Target Start/End: Original strand, 33329414 - 33329494
Alignment:
| Q |
193 |
gttttgatgatgaaggtgatgaatgttgcttggtttattgataaagatgatgaatgttgct-ggtttgatgatgaacatga |
272 |
Q |
| |
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|||||||||||||| ||||||||| || | | ||||||||| || ||||||||||||||| |||||||| ||||||||| |
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| T |
33329414 |
gttttgatgatgaatgtgatgaatttttttggatttattgatgaaaatgatgaatgttgctgggtttgatagtgaacatga |
33329494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 13324584 - 13324512
Alignment:
| Q |
194 |
ttttgatgatgaaggtgatgaatgttgcttggtttattgataaagatgatgaatgttgctggtttgatgatga |
266 |
Q |
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| T |
13324584 |
ttttgatgatgaaggtgatgaatttttatgggtttatggatgaagatgatgaattttatgggtttgatgatga |
13324512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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