View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1924_low_9 (Length: 249)
Name: NF1924_low_9
Description: NF1924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1924_low_9 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 47707869 - 47707628
Alignment:
| Q |
11 |
cataggagccaaaccaagagagagaaaaggagagaccaatatagaaatacta---gtgaactatttatcaccaaactaatcagaaacaaaatagccatgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47707869 |
cataggagccaaaccaagagagagaaaaagagagaccaatatagaaatactactagtgaactatttatcaccaaactaatcagaaacaaaatagccatgg |
47707770 |
T |
|
| Q |
108 |
cagcaaccttgataatgaactactcatggcttgtatttcccgtaacgttgttcatcattattttcttcgtttattatcaaaatgacttccttcttctact |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
47707769 |
cagcaaccttgataatgaactactcatggcttgtatttcccgtaacgttgttcatcattattttcttcgtttattatcaaaatgacttacttcttctact |
47707670 |
T |
|
| Q |
208 |
tcctaccatcaacctcccacctccaacaaacaatctcaaaac |
249 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47707669 |
tcctaccatcaatctcccacctccaacaaacaatctcaaaac |
47707628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University