View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19250_high_13 (Length: 240)
Name: NF19250_high_13
Description: NF19250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19250_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 36956168 - 36956008
Alignment:
| Q |
1 |
ctacaagcggccttatggttttaggactctctgaagcacccagagaaattcctattataacagagtgaacaataatccccaactctaacacctataatga |
100 |
Q |
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| T |
36956168 |
ctacaagcggccttatggttttaggactctctgaagcacccagagaaattcctattataacagagtgaacaataatccccaactccaacacctataatga |
36956069 |
T |
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| Q |
101 |
aatcaaaacaatattcaatcacaatcaatgttaactaaaaagatcaatatgtgatatgatt |
161 |
Q |
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| T |
36956068 |
aatcaaaacaatattcaatcacaatcaatgttaactaaaaagatcaatatgtgatatgatt |
36956008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 36939583 - 36939484
Alignment:
| Q |
9 |
ggccttatggttttaggactctctgaagcacccagagaaattcctattataacagagtgaacaataatccccaactctaacacctataatgaaatcaaaa |
108 |
Q |
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| T |
36939583 |
ggccttatagtcttaggactctctgaagcacccagagaaattcctattataacggagtgaacaataattcccaactccaatacctattatgaaatcaaaa |
36939484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 36993745 - 36993649
Alignment:
| Q |
12 |
cttatggttttaggactctctgaagcacccagagaaattcctattataacagagtgaacaataatccccaactctaacacctataatgaaatcaaaa |
108 |
Q |
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| T |
36993745 |
cttatggttttaggactctctgaagcacctaaagaaattcctatgataacagagtgaacaataattcccaactccaacacctatgataaaatcaaaa |
36993649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 37019185 - 37019089
Alignment:
| Q |
12 |
cttatggttttaggactctctgaagcacccagagaaattcctattataacagagtgaacaataatccccaactctaacacctataatgaaatcaaaa |
108 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| |||||||| ||||||||| || ||||||||| |
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| T |
37019185 |
cttatggttttaggactctctgaagcacctaaagaaattcctatgataacagagtgaacaataattcccaactccaacacctatgataaaatcaaaa |
37019089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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