View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19250_high_3 (Length: 409)
Name: NF19250_high_3
Description: NF19250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19250_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 10 - 395
Target Start/End: Complemental strand, 9738674 - 9738289
Alignment:
| Q |
10 |
gcaaaggcaagcagcagcttcaagatcagcaagaccttgaatgagtgagcaacaagggagtgttggtggggaccccaatttaactttgaccaagttcaac |
109 |
Q |
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| T |
9738674 |
gcaaaggcaagcagcagcttcaagatcagcaagaccttgaatgagtgagcaacaagggagtgttggtggggaccccaatttaactttgaccaagttcaac |
9738575 |
T |
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| Q |
110 |
aaatttgcacacacacctaacttaagtgcatctataggacatgtaccctttggagaagggttatatattgggtctgggattgggactgggatttcaggta |
209 |
Q |
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| T |
9738574 |
aaatttgcacacacacctaacttaagtgcatctataggacatgtaccctttggagaagggttatatattgggtctgggattgggactgggatttcaggta |
9738475 |
T |
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| Q |
210 |
catagttgcaattcaccatagtgaagaaaataatattgagacataggaaaaatgcaacattaaccttataagacatagtttgtgaatagtgtcttataga |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9738474 |
catagttgcaattcaccatagtgaagaaaataatattgagacataggaaaaatgcaacattaaccttataagacatagtttgtgaatagtgtcttataga |
9738375 |
T |
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| Q |
310 |
ttagtacttagtatctatttgaatgatgaaaaattagagagtttagaggggatttatatgtgtaaggattatgtaatgttaattat |
395 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9738374 |
ttagtacttagtatttatttgaatgatgaaaaattagagagtttagaggggatttatatgtgtaaggattatgtaatgttaattat |
9738289 |
T |
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