View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19250_high_8 (Length: 358)
Name: NF19250_high_8
Description: NF19250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19250_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 2017393 - 2017059
Alignment:
| Q |
19 |
taaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgattgctacgacgaaaagagcatacaggtgaaccaatcattttggggtat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2017393 |
taaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgattgctacgacgaaaagagcatacaggtgaaccaatcattttggggtat |
2017294 |
T |
|
| Q |
119 |
cagaatgacacatcttcccgtctcatcaacacgaaacaagttttttgccgttggctgtgacacgattgcaatactcgcagcatttgattttgggggaaac |
218 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2017293 |
cagaatgacacattttcccgtctcatcaacacgaaacaagtttgttgccgttggctgtgacacgattgcaatactcgcagcatttgattttgggggaaac |
2017194 |
T |
|
| Q |
219 |
aactacacgacgggatgtttggctttgtgcaacaggtttaatgatatcgtggccaatgaatcttgctccggcactggttgttgtcagatttcaataccgc |
318 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2017193 |
aactacaccacgggatgtttggctttgtgcaacaggtttaatgatatcgtggccaatgaatcttgctccggcactggttgttgtcagatttcaataccgc |
2017094 |
T |
|
| Q |
319 |
aaggtcatttgttcgagaaagtgtcctttgctact |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
|
|
| T |
2017093 |
aaggtcatttgttcgagaaagtgtcctttgttact |
2017059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 168 - 324
Target Start/End: Original strand, 40566430 - 40566586
Alignment:
| Q |
168 |
gttggctgtgacacgattgcaatactcgcagcatttgattttgggggaaacaactacacgacgggatgtttggctttgtgcaacaggtttaatgatatcg |
267 |
Q |
| |
|
||||||||||||||||||| | |||| | || |||||| |||||||||||||||||| || |||||| ||||||| ||||||||| || ||||||| |
|
|
| T |
40566430 |
gttggctgtgacacgattggagcactctcggcgattgattctgggggaaacaactacaccacaggatgtgtggctttatgcaacaggcttgatgatatta |
40566529 |
T |
|
| Q |
268 |
tggccaatgaatcttgctccggcactggttgttgtcagatttcaataccgcaaggtc |
324 |
Q |
| |
|
|||||| | |||||||||| || ||||||||||| ||||||||||||| ||||||| |
|
|
| T |
40566530 |
tggccagtcaatcttgctcaggtactggttgttgcgagatttcaataccccaaggtc |
40566586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 316
Target Start/End: Original strand, 40595769 - 40595958
Alignment:
| Q |
127 |
cacatcttcccgtctcatcaacacgaaacaagttttttgccgttggctgtgacacgattgcaatactcgcagcatttgattttgggggaaacaactacac |
226 |
Q |
| |
|
||||| ||| |||||| |||| | ||||||||| | || ||||| |||||||| || | | |||||| |||| |||||| | ||||||| ||||| |
|
|
| T |
40595769 |
cacattttcacgtctcgccaactcaaaacaagttgatagcagttggatgtgacacaatgggactactcgaagcaattgattctaaaggaaacacatacac |
40595868 |
T |
|
| Q |
227 |
gacgggatgtttggctttgtgcaacaggtttaatgatatcgtggccaatgaatcttgctccggcactggttgttgtcagatttcaatacc |
316 |
Q |
| |
|
|| | |||| |||| |||||||||||| ||| |||||| ||||||||||||||||| |||||| | ||||||||| ||||||||||||| |
|
|
| T |
40595869 |
cactgcatgtgtggccttgtgcaacaggcttagtgatattgtggccaatgaatcttgttccggcccaggttgttgtgagatttcaatacc |
40595958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 324
Target Start/End: Original strand, 40589388 - 40589562
Alignment:
| Q |
150 |
cgaaacaagttttttgccgttggctgtgacacgattgcaatactcgcagcatttgattttgggggaaacaactacacgacgggatgtttggctttgtgca |
249 |
Q |
| |
|
||||||||||| | || ||||||||||| || || |||||||| || | |||||| || |||||||||||||| | ||||||||||||| ||||| |
|
|
| T |
40589388 |
cgaaacaagttggtagcagttggctgtgatacatctggaatactcggagtaattgattctgaaggaaacaactacacctctggatgtttggcttggtgca |
40589487 |
T |
|
| Q |
250 |
acaggtttaatgatatcgtggccaatgaatcttgctccggcactggttgttgtcagatttcaataccgcaaggtc |
324 |
Q |
| |
|
||||| |||| |||| |||||||| ||||| || || |||||||||| |||||||| |||| ||||||| |
|
|
| T |
40589488 |
acaggcacgctgatctcgttgccaatgagtcttgttctggtcctggttgttgccagatttcggtaccccaaggtc |
40589562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 40570968 - 40571025
Alignment:
| Q |
19 |
taaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgattgcta |
76 |
Q |
| |
|
|||||||||| || || ||||||||||||| ||||||||||||||| || |||||||| |
|
|
| T |
40570968 |
taaacatctcactcgacggtgaactgcgtgctgcatggccagtagcaagtgattgcta |
40571025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 40577391 - 40577448
Alignment:
| Q |
19 |
taaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgattgcta |
76 |
Q |
| |
|
|||||||||| ||| |||||||||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
40577391 |
taaacatctcacttaatggtgaacttcacgttgcatggccagtagccagctattgcta |
40577448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 40566296 - 40566340
Alignment:
| Q |
34 |
atggtgaactgcgtgttgcatggccagtagccagcgattgctacg |
78 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40566296 |
atggtgaattgcacgttgcatggccagtagccagcgattgctacg |
40566340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 40595685 - 40595727
Alignment:
| Q |
34 |
atggtgaactgcgtgttgcatggccagtagccagcgattgcta |
76 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
40595685 |
atggtgaactgcatgttgcatggccagtagccagacattgcta |
40595727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 8490635 - 8490797
Alignment:
| Q |
19 |
taaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgattgctacgacgaaaagagcatacaggtgaaccaatcattttggggtat |
118 |
Q |
| |
|
|||||||||| || ||||||||||||| ||||||||||||| ||| ||| |||||||| | |||||| | | || |||||||||| ||| | || || |
|
|
| T |
8490635 |
taaacatctcactcgatggtgaactgcatgttgcatggccaataggcagtgattgctatgctgaaaagggtaaactggtgaaccaaacatatcctggcat |
8490734 |
T |
|
| Q |
119 |
cagaatgacacatcttcccgtctcatcaacacgaaacaagttttttgccgttggctgtgacac |
181 |
Q |
| |
|
|| ||||||||||||| ||||| |||| |||||||||| | || ||||| |||||||| |
|
|
| T |
8490735 |
caacatgacacatcttcaaatctcaccaaccggaaacaagttgatagcagttggttgtgacac |
8490797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University