View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19250_low_10 (Length: 278)
Name: NF19250_low_10
Description: NF19250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19250_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 4 - 263
Target Start/End: Original strand, 29286188 - 29286448
Alignment:
| Q |
4 |
tttacaattaactctaatgatatcagaaattgtgtgttattggatgacccagaagtagagaaacatgcgacacaaattggaaattagtgcagccaactaa |
103 |
Q |
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| T |
29286188 |
tttacaattaactctaatgatatcagaaattgtgtgttattggatgacccagaagtagagaaacatgcgacacaaattggaaattagtgcagccaactaa |
29286287 |
T |
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| Q |
104 |
tttccacttgccaatggctt-gacataacccttgagctagacgtctatacttattctctctacgctgagcaacaatcatatcaacatagacggaaaatga |
202 |
Q |
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| T |
29286288 |
tttccacttgccaatggctttgacataacccttgagctagacgtctatacttattctctctacgctgagcaacaatcatatcaacatagacggaaaatga |
29286387 |
T |
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| Q |
203 |
atatgattctgaagaaattttatattatagagcctacttcaaggcaagctgacaaataaat |
263 |
Q |
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| T |
29286388 |
atatgattctgaagaaattttatattatagagcatacttcaaggcaagctgacaaataaat |
29286448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 65 - 199
Target Start/End: Original strand, 35234454 - 35234593
Alignment:
| Q |
65 |
aacatgcgacacaaattggaaattagtgcagccaactaatttccacttgccaatggcttgacataaccctt-----gagctagacgtctatacttattct |
159 |
Q |
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| T |
35234454 |
aacatgctacacaaattggaaattagtgcagccaaccaatttccatttgccagtggcattgcataacctttagtttgagctagacgtatatacttattct |
35234553 |
T |
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| Q |
160 |
ctctacgctgagcaacaatcatatcaacatagacggaaaa |
199 |
Q |
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| T |
35234554 |
ctcttcgctgagcaacaatcatatcaacatagatggaaaa |
35234593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 35234825 - 35234894
Alignment:
| Q |
194 |
ggaaaatgaatatgattctgaagaaattttatattatagagcctacttcaaggcaagctgacaaataaat |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35234825 |
ggaaaatgaatatgattctgaagaaattttatattatagagcctacttcaaggcaagctgacaaataaat |
35234894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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