View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19250_low_11 (Length: 268)
Name: NF19250_low_11
Description: NF19250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19250_low_11 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 63 - 268
Target Start/End: Complemental strand, 13084750 - 13084547
Alignment:
| Q |
63 |
aactttttgtatttttggtgtgatacaagagtggtaggacagcagaagaacatgacatccttcctggtggatacgtagtaaataagggggagacagtgta |
162 |
Q |
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| T |
13084750 |
aactttttgtatttttggtgtgagac--gagtggtaggacagcagaagaacatgacatccttcctgatggctacaaagtaaataagggggaaacagtgta |
13084653 |
T |
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| Q |
163 |
ttacttgtcctatgctatgggaagaatgccttacatttggggggatgatgctgaaaaattcttacctgaaagatggctcaaagatggaatctttcaacct |
262 |
Q |
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| T |
13084652 |
ttacttgtcttatgctatgggaagaatgccttacatttggggggatgatgctcaagaattcttacctgaaagatggctcaaagatggaatctttcaacct |
13084553 |
T |
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| Q |
263 |
gaatct |
268 |
Q |
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|||||| |
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| T |
13084552 |
gaatct |
13084547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 80 - 268
Target Start/End: Complemental strand, 13077813 - 13077625
Alignment:
| Q |
80 |
gtgtgatacaagagtggtaggacagcagaagaacatgacatccttcctggtggatacgtagtaaataagggggagacagtgtattacttgtcctatgcta |
179 |
Q |
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| T |
13077813 |
gtgtgatacaagtctggtaggacagcagaagaacatgacatccttcctgatggatacatagtgaataagggggagacagtttactacttgtcctatgcta |
13077714 |
T |
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| Q |
180 |
tgggaagaatgccttacatttggggggatgatgctgaaaaattcttacctgaaagatggctcaaagatggaatctttcaacctgaatct |
268 |
Q |
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| T |
13077713 |
tgggaagaatgccttacatttggggggatgatgctcaagaattcttacctgaaagatggctcaaggatggaatctttcaacctgaatct |
13077625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 13113656 - 13113606
Alignment:
| Q |
157 |
agtgtattacttgtcctatgctatgggaagaatgccttacatttgggggga |
207 |
Q |
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| T |
13113656 |
agtgtattacttggcctatgctatgggtcgaatgtcttccatttgggggga |
13113606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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