View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19250_low_12 (Length: 255)
Name: NF19250_low_12
Description: NF19250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19250_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 8843145 - 8842901
Alignment:
| Q |
1 |
atgatttctaataatgttgcgtcaaattttgattgtttatagaattggtttagcacatacgttagattcataatctcttcttctgatttcttgtatactt |
100 |
Q |
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| T |
8843145 |
atgatttctaataatgttgcgtcaaattttgattgtttatagaattgatttagcacatacgttagattcataatctcttcttctgatttcttgtatactt |
8843046 |
T |
|
| Q |
101 |
gaatattctttcagctccttggaagcacataatcaactggtcttttgatgaaatcttcttatacaccagcacataaacaagaaccatatcatggaagtcc |
200 |
Q |
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| T |
8843045 |
gaatattctttcagctccttggaagcacataatcaactagtcttttgatgaaatcttcttatgcaccagcacataaacaagaaccatatcatggaagtcc |
8842946 |
T |
|
| Q |
201 |
ttgcagccaattatcttgatattcatgacattgattccatctgtg |
245 |
Q |
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| T |
8842945 |
ttgcagccaattatcttgatattcatgacattgattccatctgtg |
8842901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 8806999 - 8806959
Alignment:
| Q |
36 |
tttatagaattggtttagcacatacgttagattcataatct |
76 |
Q |
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| T |
8806999 |
tttatagaattggtttaacacatatattagattcataatct |
8806959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 245
Target Start/End: Original strand, 2488767 - 2488836
Alignment:
| Q |
176 |
aacaagaaccatatcatggaagtccttgcagccaattatcttgatattcatgacattgattccatctgtg |
245 |
Q |
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| T |
2488767 |
aacaagaaccatatcatggaagtgttagcagccaatgatcttgattgtcatgacctggattccatctgtg |
2488836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 2488099 - 2488142
Alignment:
| Q |
28 |
tttgattgtttatagaattggtttagcacatacgttagattcata |
72 |
Q |
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|||||||||| |||| |||||||||||||||| |||||||||||| |
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| T |
2488099 |
tttgattgtt-atagcattggtttagcacatatgttagattcata |
2488142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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