View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19250_low_13 (Length: 250)
Name: NF19250_low_13
Description: NF19250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19250_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 44203024 - 44202784
Alignment:
| Q |
1 |
catgcatatctagtattattgctttacagtgaacttattcaattgcaacgaggtgacaaagatttgacgaaactattgaatgataaatgattagtaaaat |
100 |
Q |
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| T |
44203024 |
catgcatatctagtattattgctttacagtgaacttattcaattgcaacgaggtgacaaagatttgacgaaactattgaatgataaatgattagtaaaat |
44202925 |
T |
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| Q |
101 |
taaaattatcgttgataggttaaataccatctaacagtgtctaaactctgatagctttcattaaaaagaaccggtacaattgcgacaa-agatgctatca |
199 |
Q |
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| T |
44202924 |
taaaactatcgttgataggttaaatgccatctaacagtgtctgaactctgatagctttcattaaaaagaaccggtacaattgcgacaatagatgctatca |
44202825 |
T |
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| Q |
200 |
aaattttaagtcacgaattaagctgcagaatgatgcctttg |
240 |
Q |
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| T |
44202824 |
aaattttaagtcacgaattaagctgcagaatgatgcctttg |
44202784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 44191738 - 44191511
Alignment:
| Q |
5 |
catatctagtattattgctttacagtgaacttattcaattgcaacgaggtgacaaagatttgacgaaactattgaatgataaatgattagtaaaattaaa |
104 |
Q |
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| T |
44191738 |
catatctagtattattgctttacggtgaacttattccattgcaccgaggtgacaaatatttgaggaaactatcgaatgataaatgattagtaaaatt--- |
44191642 |
T |
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| Q |
105 |
attatcgttgataggttaaataccatctaacagtgtctaaactctgatagctttcattaaaaagaaccggtacaattgcgacaa-agatgctatcaaaat |
203 |
Q |
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| T |
44191641 |
------gttgataggttgagtcccatctaacaatgtctgaactctgatgacttactttaaaaagaacaggtacaattgcgacaatatatgctatcaatat |
44191548 |
T |
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| Q |
204 |
tttaagtcacgaattaagctgcagaatgatgcctttg |
240 |
Q |
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| T |
44191547 |
tttaagccacgaaataagctgttgaatgaggcctttg |
44191511 |
T |
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