View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19250_low_2 (Length: 599)
Name: NF19250_low_2
Description: NF19250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19250_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 18 - 589
Target Start/End: Complemental strand, 30553036 - 30552472
Alignment:
| Q |
18 |
agataccactaaaaaagtttaaattgtggccacgattgcaactggataccacagtttagaagtattgactttattggaccatgcttcattgtggtccaat |
117 |
Q |
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| T |
30553036 |
agataccactaaaaaa-tttaaattgtggccacgattgcaactgggtaccacagtttagaagtattgactttattggaccatgcttcattgtggtccaat |
30552938 |
T |
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| Q |
118 |
gtatgaaatatatcgggactcaaaatagaacttannnnnnncttaattaaactgcagaaaaatatttctgaaggcagcaattttaatttcaacttcaaga |
217 |
Q |
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| T |
30552937 |
gtatgaaagagactgagactcaaaatagaacttattttttccttaattaaactgcagaaaaatatttctgaaggcagcaattttaatttcaacttcaaga |
30552838 |
T |
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| Q |
218 |
aattcctttcccgcacttatgacgaagattttgagaaggttgttggaatcaggtacttcttgatcctatcataaatacatttctgcttatattttgttac |
317 |
Q |
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| T |
30552837 |
aattcctttcccgcacttatgacgaagattttgagaaggttgttggaatcaggtacttcttgatcctatcataaatacatttctgcttatattttgttac |
30552738 |
T |
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| Q |
318 |
agaagaagaagaagtatatatttgtacacaaggtttataattataatatggacacaagcagaaaatataactgagctacataaatatttacaaaatagat |
417 |
Q |
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|||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30552737 |
agaa------gaagtatatatttgtacgcaaggtttctaattataatatggacacaagcagaaaatataactgagctacataaatatttacaaaatagat |
30552644 |
T |
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| Q |
418 |
tctttagtaatttcaaaagtatattatacaagactaaacaatcttgattaactaatcttttgatactcttgcaggttttggatctggcttttttccatat |
517 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30552643 |
tctttagtaatttcaaaagtatattataca-----aaactatcttgattaactaatcttttgatactcttgcaggttttggatctggcttttttccatat |
30552549 |
T |
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| Q |
518 |
ttttcatattccttagcgcacacggtatgacatttt-----ttaaacttgtcacttgtaactaatcatgtccctttg |
589 |
Q |
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||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30552548 |
ttttcatattccttagcgcacacggtatgtcattttacatattaaacttgtcacttgtaactaatcatgtccctttg |
30552472 |
T |
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