View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19250_low_3 (Length: 594)
Name: NF19250_low_3
Description: NF19250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19250_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 3e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 407 - 569
Target Start/End: Complemental strand, 17767588 - 17767426
Alignment:
| Q |
407 |
ggtaagctacatggtgggactgtgaagtatagtcctgaaggtaagttgctgcagatgttggaggatagtgagggaaaaattgttagagcagtgactgaag |
506 |
Q |
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| T |
17767588 |
ggtaagttacatggtgtgattgtgaagtatagtcctgaaggtaaattgctgcagatattggaggatagtgagggaaaagttgttagagcagtgagtgaag |
17767489 |
T |
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| Q |
507 |
tagaggagaaagatggtcaactttggattggaagtgttcttgtgcctttcattgcagtttata |
569 |
Q |
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| T |
17767488 |
tagaggagaaagatggtcaactttggattggaagtgttcttatgccttttattgcagtttata |
17767426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 291 - 389
Target Start/End: Complemental strand, 17768288 - 17768190
Alignment:
| Q |
291 |
ccaaatggcatctccttaagcaaagatggttccttctttgttttttgtgaagggtctattggcaggtcggtaaaccttacctaattagctagccgtctt |
389 |
Q |
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| T |
17768288 |
ccaaatggcatttccttaagcaaagattgttccttctttgttttttgtgaagggtctatcggcaggtctgtaaaccttacctctttagctagccatctt |
17768190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 431 - 568
Target Start/End: Original strand, 36947062 - 36947199
Alignment:
| Q |
431 |
aagtatagtcctgaaggtaagttgctgcagatgttggaggatagtgagggaaaaattgttagagcagtgactgaagtagaggagaaagatggtcaacttt |
530 |
Q |
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| T |
36947062 |
aagtatagccctgacggtaaacttctgcaaatattggaggacaatgagggaaaagttgttaaagcagtgagtgaagtggaggagaaggatggtaaactct |
36947161 |
T |
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| Q |
531 |
ggattggaagtgttcttgtgcctttcattgcagtttat |
568 |
Q |
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| T |
36947162 |
ggataggaagtgttttgatgcctttcattgcagtttat |
36947199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 287 - 336
Target Start/End: Original strand, 36946479 - 36946528
Alignment:
| Q |
287 |
atttccaaatggcatctccttaagcaaagatggttccttctttgtttttt |
336 |
Q |
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| T |
36946479 |
atttccaaatgggatttccttaagcaaggatggttccttctttgtatttt |
36946528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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